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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGGTGAAGAAAATTCTGGAAATCAATCCATATCTCCTGGGAACCATGGCTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGGgtaagtttgtcttcgctccttcttcctccacgattttgacactctgttcgtttgaatcacag

Basic information

species Selaginella moellendorffii
transcript EFJ25863
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ25863 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA04G37030.3 (Glycine max), 5'ss of exon 4
GTCGGTGAAGAAAATTCTGGAAATCAATCCATATCTCCTGGGAACCATGGCTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGGgtaagttt----gtcttcgctccttcttcctccacgattttgacactctgttcgtttgaatcacag----------------------------------
||| |||||||||||| | ||||||||||| ||| | || || || |||||||| ||||| || ||||| ||||| ||||| || |||||||| |    |||||  ||      |||          || | || | ||        ||||||  ||   |    |                                  
GTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGACAATGGCTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAGgtaatctttgcaaccttgagcttacaatcttgcatggttgcttttgcctgttctgttatctttaggtcagtctcctgccgaattgctgcaatagtctccc

upper sequence: EFJ25863 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: PP1S2_300V6.1 (Physcomitrella patens), 5'ss of exon 3
GTCGGTGAAGAAAATTCTGGAAATCAATCCATATCTCCTGGGAACCATGGCTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGGgta----agtttgtcttcgctccttcttcctccacgattttgacactctgttcgtttgaatcacag----------------------------------
 ||||||||||||||| |||||||||| || ||  |  |||| || |||||||| ||||| || ||||||||||| |||||  ||||||| || || || |||    |   |   || | | |||||   ||   || | |   ||  |   |  |         |                                  
ATCGGTGAAGAAAATTTTGGAAATCAACCCTTACTTGTTGGGCACAATGGCTGGAGGTGCTGCAGATTGTCAGTTTTGGCAACGAAATCTAGGCACACGAgtatctcaacgtacttttgttgcttctagttctctgaatgtagaacagtaggctgtgagtatgtggatgttcatgcaagtcaactactgggatcacagta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|70669750|gb|DN838327.1|DN838327
EST:     CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGG                         TGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
genomic: CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGGgtaagtttgt ... tgaatcacagTGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
EST: gi|70670787|gb|DN839364.1|DN839364
EST:     CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGG                         TGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
genomic: CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGGgtaagtttgt ... tgaatcacagTGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
EST: gi|169066324|gb|FE473000.1|FE473000
EST:     CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTTGGAACGCGG                         TGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
genomic: CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGGgtaagtttgt ... tgaatcacagTGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
EST: gi|169047645|gb|FE454813.1|FE454813
EST:     CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGG                         TGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
genomic: CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGGgtaagtttgt ... tgaatcacagTGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
EST: gi|169066323|gb|FE472999.1|FE472999
EST:     CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTTGGAACGCGG                         TGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
genomic: CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGGgtaagtttgt ... tgaatcacagTGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
EST: gi|169062114|gb|FE469173.1|FE469173
EST:     CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGG                         TGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
genomic: CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGGgtaagtttgt ... tgaatcacagTGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
EST: gi|169053896|gb|FE460987.1|FE460987
EST:     CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTTGGAACGCGG                         TGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
genomic: CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGGgtaagtttgt ... tgaatcacagTGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
EST: gi|70669328|gb|DN837905.1|DN837905
EST:     CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGG                         TGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
genomic: CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGGgtaagtttgt ... tgaatcacagTGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
EST: gi|169062115|gb|FE469174.1|FE469174
EST:     CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGG                         TGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
genomic: CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGGgtaagtttgt ... tgaatcacagTGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
EST: gi|169019358|gb|FE427668.1|FE427668
EST:     CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGG                         TGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
genomic: CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGGgtaagtttgt ... tgaatcacagTGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
EST: gi|169106278|gb|FE507992.1|FE507992
EST:     CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTTGGAACGCGG                         TGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
genomic: CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGGgtaagtttgt ... tgaatcacagTGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
EST: gi|169019357|gb|FE427667.1|FE427667
EST:     CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGG                         TGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
genomic: CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGGgtaagtttgt ... tgaatcacagTGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
EST: gi|169047646|gb|FE454814.1|FE454814
EST:     CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGG                         TGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT
genomic: CTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGGAACGCGGgtaagtttgt ... tgaatcacagTGCCGGCTTCACGAGCTTGCGAACAAGAGGAGGATTTCTGTTGCCGGTGCT