Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGGTACGCACACAGTTGGAGCTTCACAGGTATGCCACCGGCCGTGGATCACGCGTCATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAAgtaacttgctttcgattttccaaagggtggtgttttactagttgcttttccttgaag

Basic information

species Selaginella moellendorffii
transcript EFJ23445
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169049096|gb|FE457084.1|FE457084
EST:     GGATCACGCGTCATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAA                         CTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
genomic: GGATCACGCGTCATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAAgtaacttgct ... ttccttgaagCTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
EST: gi|169075490|gb|FE482500.1|FE482500
EST:     GGATCACGCGTTATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAA                         CTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
genomic: GGATCACGCGTCATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAAgtaacttgct ... ttccttgaagCTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
EST: gi|169115590|gb|FE517800.1|FE517800
EST:     GGATCACGCGTCATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAA                         CTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
genomic: GGATCACGCGTCATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAAgtaacttgct ... ttccttgaagCTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
EST: gi|169042089|gb|FE447190.1|FE447190
EST:     GGATCACGCGTTATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAA                         CTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
genomic: GGATCACGCGTCATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAAgtaacttgct ... ttccttgaagCTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
EST: gi|169115591|gb|FE517801.1|FE517801
EST:     GGATCACGCGTCATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAA                         CTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
genomic: GGATCACGCGTCATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAAgtaacttgct ... ttccttgaagCTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
EST: gi|169049097|gb|FE457085.1|FE457085
EST:     GGATCACGCGTCATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAA                         CTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
genomic: GGATCACGCGTCATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAAgtaacttgct ... ttccttgaagCTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
EST: gi|169043087|gb|FE454001.1|FE454001
EST:     GGATCACGCGTTATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAA                         CTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
genomic: GGATCACGCGTCATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAAgtaacttgct ... ttccttgaagCTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
EST: gi|169059656|gb|FE468890.1|FE468890
EST:     GGATCACGCGTTATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAA                         CTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
genomic: GGATCACGCGTCATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAAgtaacttgct ... ttccttgaagCTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
EST: gi|169102888|gb|FE505253.1|FE505253
EST:     GGATCACGCGTTATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAA                         CTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
genomic: GGATCACGCGTCATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAAgtaacttgct ... ttccttgaagCTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
EST: gi|169075489|gb|FE482499.1|FE482499
EST:     GGATCACGCGTTATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAA                         CTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
genomic: GGATCACGCGTCATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAAgtaacttgct ... ttccttgaagCTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
EST: gi|169059655|gb|FE468889.1|FE468889
EST:     GGATCACGCGTTATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAA                         CTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
genomic: GGATCACGCGTCATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAAgtaacttgct ... ttccttgaagCTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
EST: gi|169103838|gb|FE508348.1|FE508348
EST:     GGATCACGCGTCATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAA                         CTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC
genomic: GGATCACGCGTCATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAAgtaacttgct ... ttccttgaagCTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 39

ACATGGTACGCACACAGTTGGAGCTTCACAGGTATGCCACCGGCCGTGGATCACGCGTCATCACAGCACTGACGATGCTAAAGTCTCATCTCTTCAAgtaacttgct ... ttccttgaagCTACCAAGGTCACGTAAGCGCTGCTCTAGTGCTCGGTGGATTTGATGTATCCGGTCCTCACCTACACACT




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