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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAGAACAAAAGAAGCTGGATGTTCTTTCAAACGAAGTTTTCATCAAGGCACTGTGCAGCAGTGGTCGAGCAgtgaagttctttcaactcgtagatcttggtttttgacttgagatgttatag

Basic information

species Selaginella moellendorffii
transcript EFJ23220
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ23220 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA16G28310.1 (Glycine max), 5'ss of exon 4
GGAGAAGAACAAAAGAAGCTGGATGTTCTTTCAAACGAAGTTTTCATCAAGGCACTGTGCAGCAGTGGTCGAGCAgtgaagttctttcaactcgtagatcttggtttttgacttgagatgttatag--------------------------------------------------
|| |||||||| ||||| |||||||||||||| || || |||||||||||||| ||    |||||||| ||| |||||| ||  ||        |  || ||  ||||  |    |  |||| |||                                                  
GGTGAAGAACAGAAGAAACTGGATGTTCTTTCCAATGAGGTTTTCATCAAGGCTCTCATAAGCAGTGGCCGAACAgtga-gtgattcatgtgattttatttttattttaaataaaatgtgttttagttttgactaaaattggttttatttcttatactttaagaataatgatttta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169048146|gb|FE456861.1|FE456861
EST:     TTCTTTCAAACGAAGTTTTCATCAAGGCACTGTGCAGCAGTGGTCGAGCA                         AACGTTCTTGTCTCCGAGGAAAACGAGACTGAAATTTACGTTGAAACTTCA
genomic: TTCTTTCAAACGAAGTTTTCATCAAGGCACTGTGCAGCAGTGGTCGAGCAgtgaagttct ... gatgttatagAACGTTCTTGTCTCCGAGGAAAACGAGACTGAAATTTACGTTGAAACTTCA