1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATCATTGAAGTGAGTGGAGCACCTGGCACGCTCTACGCAAATGAGCAATTCCAGCTGCAAGTGGATTTCCCCGAGCACTATCCCATGGAAGCTCCTCAAgtacgtgtaaaaaaaagttttttttttctttttccttctcgcatagcttttgctgatccgatggacag
species | Selaginella moellendorffii |
transcript | EFJ21480 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCCAGCTGCAAGTGGATTTCCCCGAGCACTATCCCATGGAAGCTCCTCAA GTTATCTTCATCCACAATCCTCCCTTTCATCCCCATGTCTACAGCAACGGGEST: gi|169058657|gb|FE466866.1|FE466866
genomic: TCCAGCTGCAAGTGGATTTCCCCGAGCACTATCCCATGGAAGCTCCTCAAgtacgtgtaa ... cgatggacagGTTATCTTCATCCACAATCCTCCCTTTCATCCCCATGTCTACAGCAACGGG
EST: TCCAGCTGCAAGTGGATTTCCCCGAGCACTATCCCATGGAAGCTCCTCAA GTTATCTTCATCCACAATCCTCCCTTTCATCCCCATGTCTACAGCAACGGGEST: gi|169097750|gb|FE497477.1|FE497477
genomic: TCCAGCTGCAAGTGGATTTCCCCGAGCACTATCCCATGGAAGCTCCTCAAgtacgtgtaa ... cgatggacagGTTATCTTCATCCACAATCCTCCCTTTCATCCCCATGTCTACAGCAACGGG
EST: TCCAGCTGCAAGTGGATTTCCCCGAGCACTATCCCATGGAAGCTCCTCAA GTTATCTTCATCCACAATCCTCCCTTTCATCCCCATGTCTACAGCAACGGGEST: gi|169058658|gb|FE466867.1|FE466867
genomic: TCCAGCTGCAAGTGGATTTCCCCGAGCACTATCCCATGGAAGCTCCTCAAgtacgtgtaa ... cgatggacagGTTATCTTCATCCACAATCCTCCCTTTCATCCCCATGTCTACAGCAACGGG
EST: TCCAGCTGCAAGTGGATTTCCCCGAGCACTATCCCATGGAAGCTCCTCAA GTTATCTTCATCCACAATCCTCCCTTTCATCCCCATGTCTACAGCAACGGGEST: gi|169069480|gb|FE480564.1|FE480564
genomic: TCCAGCTGCAAGTGGATTTCCCCGAGCACTATCCCATGGAAGCTCCTCAAgtacgtgtaa ... cgatggacagGTTATCTTCATCCACAATCCTCCCTTTCATCCCCATGTCTACAGCAACGGG
EST: TCCAGCTGCAAGTGGATTTCCCCGAGCACTATCCCATGGAAGCTCCTCAA GTTATCTTCATCCACAATCCTCCCTTTCATCCCCATGTCTACAGCAACGGGEST: gi|169096580|gb|FE499492.1|FE499492
genomic: TCCAGCTGCAAGTGGATTTCCCCGAGCACTATCCCATGGAAGCTCCTCAAgtacgtgtaa ... cgatggacagGTTATCTTCATCCACAATCCTCCCTTTCATCCCCATGTCTACAGCAACGGG
EST: TCCAGCTGCAAGTGGATTTCCCCGAGCACTATCCCATGGAAGCTCCTCAA GTTATCTTCATCCACAATCCTCCCTTTCATCCCCATGTCTACAGCAACGGG
genomic: TCCAGCTGCAAGTGGATTTCCCCGAGCACTATCCCATGGAAGCTCCTCAAgtacgtgtaa ... cgatggacagGTTATCTTCATCCACAATCCTCCCTTTCATCCCCATGTCTACAGCAACGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCATTGAAGTGAGTGGAGCACCTGGCACGCTCTACGCAAATGAGCAATTCCAGCTGCAAGTGGATTTCCCCGAGCACTATCCCATGGAAGCTCCTCAAgtacgtgtaaaaaaaagttttttttttctttttccttctcgcatagcttttgctgatccgatggacag
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC