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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGAGATGCCAATCTCATCGACATTCCTGTCGAAATCGAGTGTCCCGATCGACACTTCTACCACgtaagtttttcaatctcttttcggttttctcttcgagattctttgctcagacttgatctttag

Basic information

species Selaginella moellendorffii
transcript EFJ20940
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ20940 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA03G41020.1 (Glycine max), 5'ss of exon 5
GTGTGGAGATGCCAATCTCATCGACATTCCTGTCGAAATCGAGTGTCCCGATCGACACTTCTACCACgtaa------gtttttca-atctcttttcggttttctctt--cgagattctttgctcagacttgatctttag----------------------------
 ||    ||||| |||||||| ||||||||||||||||| ||| |||| ||||  || |  || || ||||      |||| ||  || | |     ||| ||| ||  |    |  ||| || |   |   |                                  
ATGCTATGATGCAAATCTCATAGACATTCCTGTCGAAATAGAGAGTCCTGATCATCATTATTATCATgtaatgattagtttctcttatatttgcatagttctcttttaccatactgatttacttaatttctgtgcaagaggataaaattaaaggtttaattgtactt