1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAAGCGAAAAGCCGAGCACGAGGAAGCCGAGGTGAACATGGAGGTTCTTCTCGAGTTTTTGCAGAGATCTAGGCAGCAAAAGATGGAAGAACTTTCTGAGgtcagttgtcgtgagtcatttgggatgacaccgaccagagatttgtaagatgagcaaatgctaaccgtcttgtttctcag
species | Selaginella moellendorffii |
transcript | EFJ20512 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCGAGTTTTTGCAGAGATCTAGGCAGCAAAAGATGGAAGAACTTTCTGAG ATTCAAGGGGACTTGCAGTCGCTGAGGGAGGACATCTCTACTGTTGAGATCEST: gi|169093559|gb|FE495762.1|FE495762
genomic: TCGAGTTTTTGCAGAGATCTAGGCAGCAAAAGATGGAAGAACTTTCTGAGgtcagttgtc ... tgtttctcagATTCAAGGGGACTTGCAGTCGCTGAGGGAGGACATCTCTACTGTTGAGATC
EST: TCGAGTTTTTGCAGAGATCTAGGCAGCAAAAGATGGAAGAACTTTCTGAG ATTCAAGGGGACTTGCAGTCGCTGAGGGAGGACATCTCTACTGTTGAGATCEST: gi|169077265|gb|FE485151.1|FE485151
genomic: TCGAGTTTTTGCAGAGATCTAGGCAGCAAAAGATGGAAGAACTTTCTGAGgtcagttgtc ... tgtttctcagATTCAAGGGGACTTGCAGTCGCTGAGGGAGGACATCTCTACTGTTGAGATC
EST: TCGAGTTTTTGCAGAGATCTAGGCAGCAAAAGATGGAAGAACTTTCTGAG ATTCAAGGGGACTTGCAGTCGCTGAGGGAGGACATCTCTGCTGTTGAGATCEST: gi|169111050|gb|FE512471.1|FE512471
genomic: TCGAGTTTTTGCAGAGATCTAGGCAGCAAAAGATGGAAGAACTTTCTGAGgtcagttgtc ... tgtttctcagATTCAAGGGGACTTGCAGTCGCTGAGGGAGGACATCTCTACTGTTGAGATC
EST: TCGAGTTTTTGCAGAGATCTAGGCAGCAAAAGATGGAAGAACTTTCTGAG ATTCAAGGGGACTTGCAGTCGCTGAGGGAGGACATCTCTACTGTTGAGATC
genomic: TCGAGTTTTTGCAGAGATCTAGGCAGCAAAAGATGGAAGAACTTTCTGAGgtcagttgtc ... tgtttctcagATTCAAGGGGACTTGCAGTCGCTGAGGGAGGACATCTCTACTGTTGAGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCGAAAAGCCGAGCACGAGGAAGCCGAGGTGAACATGGAGGTTCTTCTCGAGTTTTTGCAGAGATCTAGGCAGCAAAAGATGGAAGAACTTTCTGAGgtcagttgtcgtgagtcatttgggatgacaccgaccagagatttgtaagatgagcaaatgctaaccgtcttgtttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC