1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAGCTTAATCTTTGAGTATGTCAATAACACGGACTTCAAGACCTTGTACCCGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAGgtgaggttttttaaccccatgtggattggacttgggaggattttgatcttgcttgtttttgcag
species | Selaginella moellendorffii |
transcript | EFJ20478 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAG GCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCGEST: gi|169057441|gb|FE465745.1|FE465745
genomic: CGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAGgtgaggtttt ... gtttttgcagGCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCG
EST: CGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAG GCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCGEST: gi|169054798|gb|FE460594.1|FE460594
genomic: CGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAGgtgaggtttt ... gtttttgcagGCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCG
EST: CGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAG GCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCGEST: gi|169099874|gb|FE500879.1|FE500879
genomic: CGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAGgtgaggtttt ... gtttttgcagGCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCG
EST: CGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAG GCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCGEST: gi|169054797|gb|FE460593.1|FE460593
genomic: CGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAGgtgaggtttt ... gtttttgcagGCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCG
EST: CGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAG GCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCGEST: gi|169062160|gb|FE469700.1|FE469700
genomic: CGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAGgtgaggtttt ... gtttttgcagGCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCG
EST: CGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAG GCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCGEST: gi|169040609|gb|FE449740.1|FE449740
genomic: CGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAGgtgaggtttt ... gtttttgcagGCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCG
EST: CGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAG GCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCGEST: gi|169099662|gb|FE502643.1|FE502643
genomic: CGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAGgtgaggtttt ... gtttttgcagGCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCG
EST: CGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAG GCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCGEST: gi|169040608|gb|FE449739.1|FE449739
genomic: CGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAGgtgaggtttt ... gtttttgcagGCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCG
EST: GCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAG GCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCGEST: gi|169057442|gb|FE465746.1|FE465746
genomic: GCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAGgtgaggtttt ... gtttttgcagGCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCG
EST: CGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAG GCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCGEST: gi|169099663|gb|FE502644.1|FE502644
genomic: CGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAGgtgaggtttt ... gtttttgcagGCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCG
EST: CGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAG GCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCG
genomic: CGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAGgtgaggtttt ... gtttttgcagGCACTCGATCACTGCCACTCGCAAGGAATTATGCACAGGGACGTGAAGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCTTAATCTTTGAGTATGTCAATAACACGGACTTCAAGACCTTGTACCCGACGCTGACGGACTACGATATTCGCTACTACCTGTATGAGCTTCTCAAGgtgaggttttttaaccccatgtggattggacttgggaggattttgatcttgcttgtttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT