1 5' 3' | 2 5' 3' | 3 5' 3' |
TCCGGCACAGAACGTCGAGAGCTCGCAGTGCTTGACGCTCATGGAGGCAACCAACTGTGGCAAGGATCTCTACGTGTCGGTGACAATGCCATCGGTGGAGgtacgctgaagtttcaaaagtttccctgtttgtttatctctctggtggtgctttggtctaaccaagctttttctttctcttgctttttgcttgcacag
species | Selaginella moellendorffii |
transcript | EFJ19556 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCAACTGTGGCAAGGATCTCTACGTGTCGGTGACAATGCCATCGGTGGAG GTTGGAACGATCGGTGGTGGCACGCAGCTCGCGTCGCAGAGCGCCTGTCTCEST: gi|169029368|gb|FE439769.1|FE439769
genomic: CCAACTGTGGCAAGGATCTCTACGTGTCGGTGACAATGCCATCGGTGGAGgtacgctgaa ... gcttgcacagGTTGGAACGATCGGTGGTGGCACGCAGCTCGCGTCGCAGAGCGCCTGTCTC
EST: CCAACTGTGGCAAGGATCTTTACGTGTCGGTGACAATGCCATCGGTGGAG GTTGGAACGATCGGTGGTGGCACGCAGCTCGCGTCGCAGAGCGCCTGTCTCEST: gi|169025720|gb|FE433630.1|FE433630
genomic: CCAACTGTGGCAAGGATCTCTACGTGTCGGTGACAATGCCATCGGTGGAGgtacgctgaa ... gcttgcacagGTTGGAACGATCGGTGGTGGCACGCAGCTCGCGTCGCAGAGCGCCTGTCTC
EST: CCAACTGTGGCAAGGATCTCTACGTGTCGGTGACAATGCCATCGGTGGAG GTTGGAACGATCGGTGGTGGCACGCAGCTCGCGTCGCAGAGCGCCTGTCTC
genomic: CCAACTGTGGCAAGGATCTCTACGTGTCGGTGACAATGCCATCGGTGGAGgtacgctgaa ... gcttgcacagGTTGGAACGATCGGTGGTGGCACGCAGCTCGCGTCGCAGAGCGCCTGTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCGGCACAGAACGTCGAGAGCTCGCAGTGCTTGACGCTCATGGAGGCAACCAACTGTGGCAAGGATCTCTACGTGTCGGTGACAATGCCATCGGTGGAGgtacgctgaagtttcaaaagtttccctgtttgtttatctctctggtggtgctttggtctaaccaagctttttctttctcttgctttttgcttgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG