1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTTgtaagttctatctcctttatcctttggaaaactggaaaagcttacgttttttgttttgattttgtgttag
species | Selaginella moellendorffii |
transcript | EFJ17161 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGAAGTACCGATTCGTCGTTCGCTTT TCCAACAAGGACATTGTCGCCCAGATCGCATATGCTACTATTGCTGGAGATEST: gi|169079163|gb|FE490910.1|FE490910
genomic: CGAAGTACCGATTCGTCGTTCGCTTTgtaagttcta ... tttgtgttagTCCAACAAGGACATTGTGGCCCAGATCGCATATGCTACTATTGCTGGAGAT
EST: AGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTT TCCAACAAGGACATTGTCGCCCAGATCGCATATGCTACTATTGCTGGAGATEST: gi|169033526|gb|FE442078.1|FE442078
genomic: AGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTTgtaagttcta ... tttgtgttagTCCAACAAGGACATTGTGGCCCAGATCGCATATGCTACTATTGCTGGAGAT
EST: TCGTTCGCTTT TCCAACAAGGACATTGTGGCCCAGATCGCATATGCTACTATTGCTGGAGATEST: gi|169051355|gb|FE459213.1|FE459213
genomic: TCGTTCGCTTTgtaagttcta ... tttgtgttagTCCAACAAGGACATTGTGGCCCAGATCGCATATGCTACTATTGCTGGAGAT
EST: AGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTT TCCAACAAGGACATTGTGGCCCAGATCGCATATGCTACTATTGCTGGAGATEST: gi|169110842|gb|FE509325.1|FE509325
genomic: AGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTTgtaagttcta ... tttgtgttagTCCAACAAGGACATTGTGGCCCAGATCGCATATGCTACTATTGCTGGAGAT
EST: AGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTT TCCAACAAGGACATTGTCGCCCAGATCGCATATGCTACTATTGCTGGAGATEST: gi|169039069|gb|FE448785.1|FE448785
genomic: AGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTTgtaagttcta ... tttgtgttagTCCAACAAGGACATTGTGGCCCAGATCGCATATGCTACTATTGCTGGAGAT
EST: AGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTT TCCAACAAGGACATTGTCGCCCAGATCGCATATGCTACTATTGCTGGAGATEST: gi|70670052|gb|DN838629.1|DN838629
genomic: AGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTTgtaagttcta ... tttgtgttagTCCAACAAGGACATTGTGGCCCAGATCGCATATGCTACTATTGCTGGAGAT
EST: AGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTT TCCAACAAGGACATTGTCGCCCAGATCGCATATGCTACTATTGCTGGAGATEST: gi|169106956|gb|FE508839.1|FE508839
genomic: AGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTTgtaagttcta ... tttgtgttagTCCAACAAGGACATTGTGGCCCAGATCGCATATGCTACTATTGCTGGAGAT
EST: AGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTT TCCAACAAGGACATTGTGGCCCAGATCGCATATGCTACTATTGCTGGAGATEST: gi|169041727|gb|FE449298.1|FE449298
genomic: AGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTTgtaagttcta ... tttgtgttagTCCAACAAGGACATTGTGGCCCAGATCGCATATGCTACTATTGCTGGAGAT
EST: AGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTT TCCAACAAGGACATTGTCGCCCAGATCGCATATGCTACTATTGCTGGAGATEST: gi|169033527|gb|FE442079.1|FE442079
genomic: AGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTTgtaagttcta ... tttgtgttagTCCAACAAGGACATTGTGGCCCAGATCGCATATGCTACTATTGCTGGAGAT
EST: AGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTT TCCAACAAGGACATTGTGGCCCAGATCGCATATGCTACTATTGCTGGAGAT
genomic: AGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTTgtaagttcta ... tttgtgttagTCCAACAAGGACATTGTGGCCCAGATCGCATATGCTACTATTGCTGGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGAACAAATACAACACACCGAAGTACCGATTCGTCGTTCGCTTTgtaagttctatctcctttatcctttggaaaactggaaaagcttacgttttttgttttgattttgtgttag
- - - - - - - - - - - - - - - - - - - - - - - AAGAAC