1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCGCCGTGGATGGGGAATTGCCGGTGTTGAGAGAAATGGTGAAGCACGAGCTCGGGGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTTgtgagtatttttcttttgcgtaccaccacaagttcttaaacacttcccttgtttag
species | Selaginella moellendorffii |
transcript | EFJ17159 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACGAGCTCGGAGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTT TGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCTCAEST: gi|169070813|gb|FE480649.1|FE480649
genomic: ACGAGCTCGGGGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTTgtgagtattt ... ccttgtttagTGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCTCA
EST: ACGAGCTCGGGGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTT TGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCTCAEST: gi|169049553|gb|FE457723.1|FE457723
genomic: ACGAGCTCGGGGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTTgtgagtattt ... ccttgtttagTGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCTCA
EST: ACGAGCTCGGAGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTT TGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCTCAEST: gi|169081337|gb|FE488768.1|FE488768
genomic: ACGAGCTCGGGGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTTgtgagtattt ... ccttgtttagTGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCTCA
EST: GCTGCGGAAGTGGACCATGAGTTT TGCAAGGTCTTCACCATTGACAAGGAGATGACTGTCGATATGGTTTTCTCAEST: gi|169115457|gb|FE516198.1|FE516198
genomic: GCTGCGGAAGTGGACCATGAGTTTgtgagtattt ... ccttgtttagTGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCTCA
EST: CGAGCTCGGGGCAGGAG-TTGTGGGAGCTGCGGAAGTGGACCATGAGTTT TGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCTCAEST: gi|169045760|gb|FE451187.1|FE451187
genomic: CGAGCTCGGGGCAGGAGTTTGT-GGAGCTGCGGAAGTGGACCATGAGTTTgtgagtattt ... ccttgtttagTGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCTCA
EST: ACGAGCTCGGGGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTT TGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCTEST: gi|169088109|gb|FE493361.1|FE493361
genomic: ACGAGCTCGGGGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTTgtgagtattt ... ccttgtttagTGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCT
EST: ACGAGCTCGGAGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTT TGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCTCAEST: gi|169115458|gb|FE516199.1|FE516199
genomic: ACGAGCTCGGGGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTTgtgagtattt ... ccttgtttagTGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCTCA
EST: ACGAGCTCGGGGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTT TGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCTCAEST: gi|169081338|gb|FE488769.1|FE488769
genomic: ACGAGCTCGGGGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTTgtgagtattt ... ccttgtttagTGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCTCA
EST: AGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTT TGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCTCAEST: gi|169088108|gb|FE493360.1|FE493360
genomic: AGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTTgtgagtattt ... ccttgtttagTGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCTCA
EST: ACGAGCTCGGAGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTT TGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCTCAEST: gi|169070814|gb|FE480650.1|FE480650
genomic: ACGAGCTCGGGGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTTgtgagtattt ... ccttgtttagTGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCTCA
EST: ACGAGCTCGGGGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTT TGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCTCA
genomic: ACGAGCTCGGGGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTTgtgagtattt ... ccttgtttagTGCAAGGTCTTCAACATTGACAAGGAGATGACTGTCGATATGGTTTTCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCCGTGGATGGGGAATTGCCGGTGTTGAGAGAAATGGTGAAGCACGAGCTCGGGGCAGGAGTTTGTGGAGCTGCGGAAGTGGACCATGAGTTTgtgagtatttttcttttgcgtaccaccacaagttcttaaacacttcccttgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA