1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAAGCGCGCGACTGCCTTTGGCTTGATGAAGATTGATGACGAAGGCCGGATCACAGAGTTTTCTGAGAAGCCGAAAGGAAGTGCTCTCAAGGCTATGGAGgtatatttattgtcgtttgtttgcgctgactagaatcgaaacaataatgctatgctgctcttgcag
species | Selaginella moellendorffii |
transcript | EFJ17026 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCACAGAGTTTTCTGAGAAGCCGAAAGGAAGTGCTCTCAAGGCTATGGAG GTGGACACGACAATTCTTGGTCTGGATCCGGAAAGAGCTAAAGAGATGCCTEST: gi|169049076|gb|FE456128.1|FE456128
genomic: TCACAGAGTTTTCTGAGAAGCCGAAAGGAAGTGCTCTCAAGGCTATGGAGgtatatttat ... gctcttgcagGTGGACACGACAATTCTTGGTCTGGATCCGGAAAGAGCTAAAGAGATGCCT
EST: TCACAGAGTTTTCTGAGAAGCCGAAAGGAAGTGCTCTCAAGGCTATGGAG GTGGACACGACAATTCTTGGTCTGGATCCGGAAAGAGCTAAAGAGATGCCTEST: gi|169088343|gb|FE492061.1|FE492061
genomic: TCACAGAGTTTTCTGAGAAGCCGAAAGGAAGTGCTCTCAAGGCTATGGAGgtatatttat ... gctcttgcagGTGGACACGACAATTCTTGGTCTGGATCCGGAAAGAGCTAAAGAGATGCCT
EST: TCACAGAGTTTTCTGAGAAGCCGAAAGGAAGTGCTCTCAAGGCTATGGAG GTGGACACGACAATTCTTGGTCTGGATCCGGAAAGAGCTAAAGAGATGCCT
genomic: TCACAGAGTTTTCTGAGAAGCCGAAAGGAAGTGCTCTCAAGGCTATGGAGgtatatttat ... gctcttgcagGTGGACACGACAATTCTTGGTCTGGATCCGGAAAGAGCTAAAGAGATGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCGCGCGACTGCCTTTGGCTTGATGAAGATTGATGACGAAGGCCGGATCACAGAGTTTTCTGAGAAGCCGAAAGGAAGTGCTCTCAAGGCTATGGAGgtatatttattgtcgtttgtttgcgctgactagaatcgaaacaataatgctatgctgctcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA