1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGCTCAGGGAATGTTTGTCAATTTCAACGAGCTGCTGCTTTATAACGGTGGCAAACTACCTTTTGGTGCAGCTCAAGTCGGCCAGGCATTTCGAAACGAGgtagagatttgcttttgctctcctttctcttttgtgtttagaagctgagtttggatgcttcag
species | Selaginella moellendorffii |
transcript | EFJ16329 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCAAACTACCTTTTGGTGCAGCTCAAGTCGGCCAGGCATTTCGAAACGAG ATTTCTCCACGACAAGGTTTGCTGAGGGTGCGCGAGTTTACGCTCGCGGAGEST: gi|169071770|gb|FE477147.1|FE477147
genomic: GCAAACTACCTTTTGGTGCAGCTCAAGTCGGCCAGGCATTTCGAAACGAGgtagagattt ... gatgcttcagATTTCTCCACGACAAGGTTTGCTGAGGGTGCGCGAGTTTACGCTCGCGGAG
EST: GCAAACTACCTTTTGGTGCAGCTCAAGTCGGCCAGGCATTTCGTAACGAG ATTTCTCCACGACAAGGTTTGCTGAGGGTGCGCGAGTTTACGCTCGCGGAGEST: gi|169066176|gb|FE475169.1|FE475169
genomic: GCAAACTACCTTTTGGTGCAGCTCAAGTCGGCCAGGCATTTCGAAACGAGgtagagattt ... gatgcttcagATTTCTCCACGACAAGGTTTGCTGAGGGTGCGCGAGTTTACGCTCGCGGAG
EST: GCAAACTACCTTTTGGTGCAGCTCAAGTCGGCCAGGCATTTCGTAACGAG ATTTCTCCACGACAAGGTTTGCTGAGGGTGCGCGAGTTTACGCTCGCGGAGEST: gi|169037417|gb|FE445508.1|FE445508
genomic: GCAAACTACCTTTTGGTGCAGCTCAAGTCGGCCAGGCATTTCGAAACGAGgtagagattt ... gatgcttcagATTTCTCCACGACAAGGTTTGCTGAGGGTGCGCGAGTTTACGCTCGCGGAG
EST: GCAAACTACCTTTTGGTGCAGCTCAAGTCGGCCAGGCATTTCGTAACGAG ATTTCTCCACGACAAGGTTTGCTGAGGGTGCGCGAGTTTACGCTCGCGGAGEST: gi|169075797|gb|FE482794.1|FE482794
genomic: GCAAACTACCTTTTGGTGCAGCTCAAGTCGGCCAGGCATTTCGAAACGAGgtagagattt ... gatgcttcagATTTCTCCACGACAAGGTTTGCTGAGGGTGCGCGAGTTTACGCTCGCGGAG
EST: GCAAACTACCTTTTGGTGCAGCTCAAGTCGGCCAGGCATTTCGTAACGAG ATTTCTCCACGACAAGGTTTGCTGAGGGTGCGCGAGTTTACGCTCGCGGAGEST: gi|169113224|gb|FE515497.1|FE515497
genomic: GCAAACTACCTTTTGGTGCAGCTCAAGTCGGCCAGGCATTTCGAAACGAGgtagagattt ... gatgcttcagATTTCTCCACGACAAGGTTTGCTGAGGGTGCGCGAGTTTACGCTCGCGGAG
EST: GCAAACTACCTTTTGGTGCAGCTCAAGTCGGCCAGGCATTTCGTAACGAG ATTTCTCCACGACAAGGTTTGCTGAGGGTGCGCGAGTTTACGCTCGCGGAGEST: gi|169028252|gb|FE434051.1|FE434051
genomic: GCAAACTACCTTTTGGTGCAGCTCAAGTCGGCCAGGCATTTCGAAACGAGgtagagattt ... gatgcttcagATTTCTCCACGACAAGGTTTGCTGAGGGTGCGCGAGTTTACGCTCGCGGAG
EST: GCAAACTACCTTTTGGTGCAGCTCAAGTCGGCCAGGCATTTCGTAACGAG ATTTCTCCACGACAAGGTTTGCTGAGGGTGCGCGAGTTTACGCTCGCGGAGEST: gi|169108055|gb|FE513299.1|FE513299
genomic: GCAAACTACCTTTTGGTGCAGCTCAAGTCGGCCAGGCATTTCGAAACGAGgtagagattt ... gatgcttcagATTTCTCCACGACAAGGTTTGCTGAGGGTGCGCGAGTTTACGCTCGCGGAG
EST: GCAAACTACCTTTTGGTGCAGCTCAAGTCGGCCAGGCATTTCGAAACGAG ATTTCTCCACGACAAGGTTTGCTGAGGGTGCGCGAGTTTACGCTCGCGGAGEST: gi|169108316|gb|FE511961.1|FE511961
genomic: GCAAACTACCTTTTGGTGCAGCTCAAGTCGGCCAGGCATTTCGAAACGAGgtagagattt ... gatgcttcagATTTCTCCACGACAAGGTTTGCTGAGGGTGCGCGAGTTTACGCTCGCGGAG
EST: CAGCTCAAGTCGGCCAGGCATTTCGTAACGAG ATTTCTCCACGACAAGGTTTGCTGAGGGTGCGCGAGTTTACGCTCGCGGAG
genomic: CAGCTCAAGTCGGCCAGGCATTTCGAAACGAGgtagagattt ... gatgcttcagATTTCTCCACGACAAGGTTTGCTGAGGGTGCGCGAGTTTACGCTCGCGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTCAGGGAATGTTTGTCAATTTCAACGAGCTGCTGCTTTATAACGGTGGCAAACTACCTTTTGGTGCAGCTCAAGTCGGCCAGGCATTTCGAAACGAGgtagagatttgcttttgctctcctttctcttttgtgtttagaagctgagtttggatgcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA