1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTGGCTACCTGGTGTGGTGCTTGACGATTTACGTGATCAACGATAGTGATCTCGTCCAACGATTCATGAAATTTCCTGCCATCCGAGAGAAGTTCCTACCgtaagctacgagttttttatttcttttttctgtactaaaataatcttcttccag
species | Selaginella moellendorffii |
transcript | EFJ15215 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTCGTCCAACGATTCATGAAATTTCCTGCCATCCGAGAGAAGTTCCTACC ATGGGAGCTGTGGACGTACGTCATTGGACTCCGGTTTGGATTTCTTGGTCTEST: gi|169061877|gb|FE470171.1|FE470171
genomic: CTCGTCCAACGATTCATGAAATTTCCTGCCATCCGAGAGAAGTTCCTACCgtaagctacg ... cttcttccagATGGGAGCTGTGGACGTACGTCATTGGACTCCGGTTTGGATTTCTTGGTCT
EST: CTCGTCCAACGATTCATGAAATTTCCTGCCATCCGAGAGAAGTTCCTACC ATGGGAGCTGTGGACGTACGTCATTGGACTCCGGTTTGGATTTCTTGGTCTEST: gi|169051580|gb|FE458463.1|FE458463
genomic: CTCGTCCAACGATTCATGAAATTTCCTGCCATCCGAGAGAAGTTCCTACCgtaagctacg ... cttcttccagATGGGAGCTGTGGACGTACGTCATTGGACTCCGGTTTGGATTTCTTGGTCT
EST: GAGAGAAGTTCCTACC ATGGGAGCTGTGGACGTACGTCATTGGACTCCGGTTTGGATTTCTTGGTCTEST: gi|169087054|gb|FE493079.1|FE493079
genomic: GAGAGAAGTTCCTACCgtaagctacg ... cttcttccagATGGGAGCTGTGGACGTACGTCATTGGACTCCGGTTTGGATTTCTTGGTCT
EST: GAGAGAAGTTCCTACC ATGGGAGCTGTGGACGTACGTCATTGGACTCCGGTTTGGATTTCTTGGTCTEST: gi|169094202|gb|FE492100.1|FE492100
genomic: GAGAGAAGTTCCTACCgtaagctacg ... cttcttccagATGGGAGCTGTGGACGTACGTCATTGGACTCCGGTTTGGATTTCTTGGTCT
EST: CTCGTCCAACGATTCATGAAATTTCCTGCCATCCGAGAGAAGTTCCTACC ATGGGAGCTGTGGACGTACGTCATTGGACTCCGGTTTGGATTTCTTGGTCT
genomic: CTCGTCCAACGATTCATGAAATTTCCTGCCATCCGAGAGAAGTTCCTACCgtaagctacg ... cttcttccagATGGGAGCTGTGGACGTACGTCATTGGACTCCGGTTTGGATTTCTTGGTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGCTACCTGGTGTGGTGCTTGACGATTTACGTGATCAACGATAGTGATCTCGTCCAACGATTCATGAAATTTCCTGCCATCCGAGAGAAGTTCCTACCgtaagctacgagttttttatttcttttttctgtactaaaataatcttcttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT