1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCCAGATGCTCTACGCTCTTCGAGCCTCCCTCGACTTGATCTTCGAGGAGGGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgttttcatttctccaagttatcggcttgtgtatcttaacttcgagaggtttttgacgcgactgattgtgaaatcttcgcag
species | Selaginella moellendorffii |
transcript | EFJ15151 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169052102|gb|FE463223.1|FE463223
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169040696|gb|FE447331.1|FE447331
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169103110|gb|FE506307.1|FE506307
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169114563|gb|FE516633.1|FE516633
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169052820|gb|FE461198.1|FE461198
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGGAGA-GCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169112651|gb|FE509424.1|FE509424
genomic: GCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGG-AGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169036992|gb|FE446058.1|FE446058
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169075995|gb|FE482862.1|FE482862
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169108139|gb|FE512512.1|FE512512
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169030413|gb|FE438669.1|FE438669
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169115603|gb|FE517813.1|FE517813
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169098472|gb|FE500166.1|FE500166
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169039551|gb|FE449941.1|FE449941
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169103252|gb|FE505630.1|FE505630
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169105004|gb|FE505885.1|FE505885
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169071460|gb|FE480425.1|FE480425
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169107737|gb|FE511460.1|FE511460
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169103587|gb|FE508955.1|FE508955
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169093294|gb|FE492676.1|FE492676
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169064861|gb|FE475557.1|FE475557
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169094120|gb|FE496100.1|FE496100
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169054674|gb|FE461614.1|FE461614
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169103670|gb|FE506867.1|FE506867
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169060857|gb|FE469252.1|FE469252
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169110099|gb|FE511585.1|FE511585
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169054643|gb|FE461583.1|FE461583
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169055017|gb|FE462945.1|FE462945
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169113217|gb|FE515191.1|FE515191
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169115602|gb|FE517812.1|FE517812
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169037462|gb|FE445527.1|FE445527
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169070621|gb|FE478845.1|FE478845
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169108140|gb|FE512513.1|FE512513
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169113226|gb|FE515499.1|FE515499
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169022293|gb|FE431252.1|FE431252
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169065038|gb|FE475110.1|FE475110
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169019654|gb|FE427990.1|FE427990
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169040697|gb|FE447332.1|FE447332
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTGEST: gi|169066514|gb|FE474100.1|FE474100
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
EST: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAG GCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
genomic: GGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgtt ... atcttcgcagGCTAGCGGTGGCAGCGTGGGGACTGAAGCTGTGCACTAAACGTCCCGAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAGATGCTCTACGCTCTTCGAGCCTCCCTCGACTTGATCTTCGAGGAGGGCCTGGACAACGTTATCAAGAGGCACGCCAGGCTTGGAGAAGCCACAAGgttcgatgttttcatttctccaagttatcggcttgtgtatcttaacttcgagaggtttttgacgcgactgattgtgaaatcttcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC