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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAGAAACGCAAGTATCCCGGCGGCGCGTTCGACCCTCTTGGATTTTCCAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattttctcaaagttggcagtgaacatcataccatttttgcttgcttgcttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ15021
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ15021 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: LOC_Os06g21590.1 (Oryza sativa), 5'ss of exon 3
GCTGAGAAACGCAAGTATCCCGGCGGCGCGTTCGACCCTCTTGGATTTTCCAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattttctcaaagttggcagtgaacatc--ataccatttttgcttgct---tgcttgcag---------------------------------------------
 | |||||    ||||| ||||||||||| |||||||| || || || |||||||||||    ||||||||||||| |||||| |||||  | || ||||||  ||| |    | || ||  |  |     |   ||| |  |   | |||     |  ||  |                                              
CCCGAGAAGAAGAAGTACCCCGGCGGCGCCTTCGACCCCCTCGGCTTCTCCAAGGACCCCGTCAAGTTCGAGGAGTACAAGCTCAAGGAGATCAAGAACGgtatgcaatgcacccaacttttctttttttttttaataacgataacggttgtcaaatatttagaaacggagacgataacatatgcgtatatattatcgatcggtttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169099025|gb|FE501759.1|FE501759
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169049240|gb|FE459516.1|FE459516
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169027125|gb|FE435659.1|FE435659
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCCAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169074598|gb|FE481179.1|FE481179
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGNGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169039940|gb|FE447615.1|FE447615
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169111613|gb|FE513970.1|FE513970
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169038566|gb|FE448035.1|FE448035
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169101979|gb|FE504994.1|FE504994
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169042914|gb|FE452073.1|FE452073
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169054656|gb|FE461596.1|FE461596
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGNGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169098824|gb|FE503352.1|FE503352
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169040077|gb|FE447050.1|FE447050
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169050118|gb|FE460186.1|FE460186
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169051686|gb|FE457919.1|FE457919
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169039138|gb|FE448293.1|FE448293
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169038227|gb|FE443926.1|FE443926
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169046050|gb|FE453128.1|FE453128
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169095651|gb|FE498342.1|FE498342
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169111614|gb|FE513971.1|FE513971
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169039788|gb|FE449450.1|FE449450
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169103480|gb|FE507379.1|FE507379
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169059127|gb|FE468272.1|FE468272
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169095888|gb|FE499736.1|FE499736
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169074597|gb|FE481178.1|FE481178
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169062770|gb|FE470856.1|FE470856
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169047900|gb|FE455965.1|FE455965
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169088671|gb|FE491531.1|FE491531
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169040104|gb|FE447051.1|FE447051
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169034872|gb|FE442315.1|FE442315
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169039838|gb|FE447524.1|FE447524
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169048819|gb|FE456625.1|FE456625
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169044445|gb|FE451069.1|FE451069
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169066493|gb|FE476250.1|FE476250
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169051251|gb|FE459161.1|FE459161
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169038567|gb|FE448036.1|FE448036
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169034857|gb|FE444046.1|FE444046
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169110878|gb|FE512650.1|FE512650
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169045061|gb|FE450918.1|FE450918
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169039109|gb|FE448797.1|FE448797
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169062023|gb|FE470993.1|FE470993
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGNGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169064603|gb|FE471334.1|FE471334
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169059595|gb|FE468829.1|FE468829
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169061860|gb|FE470154.1|FE470154
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169034711|gb|FE445603.1|FE445603
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169088606|gb|FE493897.1|FE493897
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169024210|gb|FE432523.1|FE432523
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGNGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169043615|gb|FE452683.1|FE452683
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169056756|gb|FE465983.1|FE465983
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169074087|gb|FE483502.1|FE483502
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169055786|gb|FE465365.1|FE465365
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169034568|gb|FE446461.1|FE446461
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169036912|gb|FE446030.1|FE446030
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169055888|gb|FE465102.1|FE465102
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169060155|gb|FE468141.1|FE468141
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169054657|gb|FE461597.1|FE461597
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTTTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169065998|gb|FE473782.1|FE473782
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169088672|gb|FE491532.1|FE491532
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGNGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169058460|gb|FE466357.1|FE466357
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169044426|gb|FE451063.1|FE451063
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169045060|gb|FE450917.1|FE450917
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169058461|gb|FE466358.1|FE466358
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGNGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169068772|gb|FE478465.1|FE478465
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169040823|gb|FE447874.1|FE447874
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169043976|gb|FE454370.1|FE454370
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169105983|gb|FE504343.1|FE504343
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGNGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169066079|gb|FE473863.1|FE473863
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169046051|gb|FE453129.1|FE453129
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169043616|gb|FE452684.1|FE452684
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169065343|gb|FE473244.1|FE473244
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGNGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169047132|gb|FE457213.1|FE457213
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
EST: gi|169105982|gb|FE504342.1|FE504342
EST:     CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACG                         GTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT
genomic: CAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 151

GCTGAGAAACGCAAGTATCCCGGCGGCGCGTTCGACCCTCTTGGATTTTCCAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattt ... ttgcttgcagGTCGTCTTGCACTGCTCGCTTTCTTGGGATTCTGCGCCCAAGCAGCAGCCTATCCAGGAACAGGTCCCTTGCAGAACTTGGCCACCCACCTTGCCGATCC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGAGAAACGCAAGTATCCCGGCGGCGCGTTCGACCCTCTTGGATTTTCCAAGGACCCGAAGAAGTTCGAGGAGTTCAAGCTGAAGGAAGTGAAAAACGgtgagcattttctcaaagttggcagtgaacatcataccatttttgcttgcttgcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA