Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgatgcttcttttttcttttctccctctttcgttctgatttgagattcgtgaccag

Basic information

species Selaginella moellendorffii
transcript EFJ14726
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 5'ss of exon 4
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacga---tgcttcttttttcttttctccctctttcgt---tctgatttga----gattcgtgaccag--------
||||||||||||||||||||||| || ||||||||| | || ||||||||||||||||| || ||||   |    ||||| ||||| ||  |  || | ||||||| |    |  |||| || |    | ||     ||| |     || | |||      |  || ||  |        
GGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaaggctctatttctattattgactttcggatattcatgcccttgctctgaccatattatgttacttgtatggcag

upper sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 5'ss of exon 4
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaa-----acgatgcttcttttt---tcttttctccctctttcgttctgatttgagat-tcgtgaccag------------------------
|||||||| ||||||||||||||||| ||||||||| | || ||||| ||||||||||| || || |   |    ||||| ||||| ||  |  || | |||| |     | |||||||   |||   |  ||        ||| | | || |   || | |  | |   |                        
GGCTATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGTGTGCTTACTTCTGGACGTGTCCGCCTTCTCCTCCACAGGGgtagatgtttaagatgcttacatttgaatggttatgtttcattttgctttgctggcaggtgttctaatgtgaatgttccatttttatactgacag

upper sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GRMZM2G054136_T06 (Zea mays), 5'ss of exon 3
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgatgcttctttt--------ttcttttctccctctttcgttctgattt-------gagattcgtgaccag-----------------------
|| |||||||||||||||||||| |||||||||||| | |||||||| |||||||| || ||  | |   |    ||||| || || ||| |  |  | |||| |  ||       |||         |||   | || |||||   |||||||         | |||||  | ||                        
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagagacttcctatttacagtgtactctcagcaccatcttttactctgattcttatctgaacattcgatatcaattctgtagggactccctgcttcc

upper sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GRMZM2G054136_T02 (Zea mays), 5'ss of exon 3
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgatgcttctttt--------ttcttttctccctctttcgttctgattt-------gagattcgtgaccag--------
|| |||||||||||||||||||| |||||||||||| | |||||||| |||||||| || ||  | |   |    ||||| || || ||| |  |  | |||| |  ||       |||         |||   | || |||||   |||||||         | |||||  | ||         
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagagacttcctatttacagtgtactctcagcaccatcttttactctgattcttatctgaacattcgatatcaattctgtag

upper sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GRMZM2G054136_T01 (Zea mays), 5'ss of exon 4
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgatgcttctt--------ttttcttttctccctctttcgttctgattt-------gagattcgtgaccag--------
|| |||||||||||||||||||| |||||||||||| | |||||||| |||||||| || ||  | |   |    ||||| || || ||| |  |  | |||| |  ||       |        |  |||   | || |||||   |||||||         | |||||  | ||         
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagagacttcctatgtccagtgtactctcaacaccatcttttactctgattcttatctgaacattcgatatcaattctgtag

upper sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GRMZM5G851698_T01 (Zea mays), 5'ss of exon 4
---------GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacga-tgcttcttttttcttttctccctctttcgttctgatttgagattcgtgaccag
         || |||||||||||||||||||| |||||||||||  | |||||||| |||||||| || || || |   |    ||||| ||||| ||| |  || |||||| |  || ||  |||   || |  ||                                   
GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATgtgacaaacaaggcttcccaatgaagcaaggagttctgacttctggtcgtgtccgccttctgctccacagaggtatatagactgtatctccattgtactc-----------------------------------

upper sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacga-tgcttcttttttcttttctcc-ctctttcgttctgatttgagattcgtgaccag----------------------
|| |||||||||||||||||||| |||||||||||  | |||||||| |||||||| || || || |   |    ||||| ||||| ||| |  || |||||| |  || ||  |||   || |  ||||  | |   |  | | |  || | ||| |  |                         
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagactgtatctccattgtactctcaacaccccctcttttacctgtggttcttatctgaacatttgatatgaattgtgtag

upper sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgta--aaacgatgcttctttttt----cttttctccctctttcgttctgatttgagattcgtgaccag-----------------------------
|| || || ||||||||||||||||||||||||||| | || ||||| ||||| || || || ||||   |   |||||| || ||  || |  |||||||||  | |     |  | ||  |     | | |  | ||| |  || | |||     |  |||                                  
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagattccaccccattgataaaattatacagcttctctttttttcattaatcttctgtgttttttatttatgtgatctggttattgtgtttag

upper sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaac---gatgcttcttttttctt------ttctccctctttcgttctgatttgagat---tcgtgaccag-----------------------------------------------------------------------------------
|||||||| ||||| ||||||||||| ||||||||| | || ||||| ||||||||||| ||  | |   |    |||||  | ||| || |  |  |||||        | || |   ||  | ||       |  ||  | ||| |||   ||| ||||   ||  | ||||                                                                                   
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag

upper sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 5'ss of exon 4
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgt----aaaacgatgcttcttttttcttt---tctccctctttcgttctgatttgagattcgtgaccag--------------------------------------------
|||||||| |||||||||||||| || ||||||||| | || || || ||||||||||| || || |   |    |||||  | ||  || |  |  | |||    |||  |   ||  | |  || ||         ||        | | || | |||  |   ||                                             
GGCTATGTTTTCAAGATCATGGGTGGTTGTGACAAGCAAGGGTTTCCCATGAAGCAGGGAGTACTGACTCCTGGCCGTGTTAGTCTTTTGCTTCATAGGGgtgagtaaactgggactgttctaatccttaaaaactgatcacaacccttaagttcatatttttatgcaagttgggtctatgagatttattacactttatgcttatttgagcag

upper sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgta-------aaacgatgcttcttttt---------tcttttctccctctttcgttctgatttgagattcgtgaccag-----------------------------------------------------------------------------------
|| |||||||||||||| |||||||| || |||||| | || ||||||||||||||||| || ||||        |||||||  ||| || |  || ||||||       ||||   |||  | | |         || ||| || |      |    | | ||      | ||  ||                                                                                   
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatataaacacagctggtatgtctgagtagatcatttatcgcgtcactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag

upper sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: PP1S253_38V6.1 (Physcomitrella patens), 5'ss of exon 3
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgatgctt---------cttttttcttttctccctctttcgttctgatttgagattcgtgaccag-------------------------------------------------------------------------------------------------------------------
|| ||||||||||||||||||||||| || |||||| | || ||||| ||||||||||| || ||||        |||||||  |||||| |  || ||||||   ||||   |           ||  | |  |         | ||    |   || |||  || ||                                                                                                                     
GGGTATGTCTTCAAGATCATGGGAGGCTGCGACAAGCAGGGTTTCCCAATGAAGCAGGGAGTTCTCACTCAAGGCCGTGTGCAGCTCCTGATGCACAGAGgtatggcgatagatagacacgggtgttggtgtcatgaagtaggctagtctgaacgagacatttatgtcctcgctgctcctcttgtgcaacaagcgttgagtggggttgtggagtggtttgatgggctcagtatgggtgcgagaatttagttctcccttttgtaacgattattgtgtgttgttgcag

upper sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: PP1S311_33V6.1 (Physcomitrella patens), 5'ss of exon 3
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgatgcttcttttttcttttctccctctttcgttctgat-ttgagattcgtgaccag---------------------------------------------------------------------------------------------------------
|| || || |||||||| |||||||||||||||||| | || ||||| ||||||||||| ||| | |    |   |||||||  || ||| |  ||||||||| |||| |       |     || |||    | || | ||  |  || || |  |   |                                                                                                           
GGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAGGGTTTCCCCATGAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgttaaccacctgccgcttcctct---tgtcatgctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgcacacctacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaag

upper sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: PP1S311_33V6.2 (Physcomitrella patens), 5'ss of exon 3
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgatgcttcttttttcttttctccctctttcgttctgatttgagattcgtgaccag-
                                       | |     |||||     | | | ||||||| |      |||  |  | || | |   ||| | ||  ||| | | ||     || |       |   ||    |   | | |||   |  |  
-------------------------------------TCGTCAATTTTATGACAAGCGTCTTGCTCAAGAGgtcagtggtgaccagcttggtga--tgagttcaagggatacgttttcaagattatgggaggat---gtgacaagcagggtttccccatgaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169034100|gb|FE444251.1|FE444251
EST:     AGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: AGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169101825|gb|FE500771.1|FE500771
EST:     GAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169048524|gb|FE454419.1|FE454419
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169067524|gb|FE475773.1|FE475773
EST:     GAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169040200|gb|FE448122.1|FE448122
EST:     GAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169049454|gb|FE458300.1|FE458300
EST:     GAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169055042|gb|FE462957.1|FE462957
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169064126|gb|FE472313.1|FE472313
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169073800|gb|FE484021.1|FE484021
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169112742|gb|FE515118.1|FE515118
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169075486|gb|FE482496.1|FE482496
EST:     GAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169054062|gb|FE462297.1|FE462297
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169074735|gb|FE483305.1|FE483305
EST:     GAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169035698|gb|FE446183.1|FE446183
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169101824|gb|FE500770.1|FE500770
EST:     GAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169056221|gb|FE464070.1|FE464070
EST:     GAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169075485|gb|FE482495.1|FE482495
EST:     GAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169039337|gb|FE449090.1|FE449090
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169102758|gb|FE503966.1|FE503966
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169112741|gb|FE515117.1|FE515117
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169076014|gb|FE480996.1|FE480996
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169058309|gb|FE465023.1|FE465023
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169074734|gb|FE483304.1|FE483304
EST:     GAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169063115|gb|FE471637.1|FE471637
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169049702|gb|FE457768.1|FE457768
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169064127|gb|FE472314.1|FE472314
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169054809|gb|FE460605.1|FE460605
EST:     GAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCTATGGTCAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169061223|gb|FE470349.1|FE470349
EST:     GAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169065536|gb|FE474828.1|FE474828
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169051339|gb|FE457650.1|FE457650
EST:     GAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169048523|gb|FE454418.1|FE454418
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169058310|gb|FE465024.1|FE465024
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169067221|gb|FE474989.1|FE474989
EST:     GAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169054063|gb|FE462298.1|FE462298
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169056220|gb|FE464069.1|FE464069
EST:     GAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169036060|gb|FE446766.1|FE446766
EST:     GAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169070522|gb|FE479799.1|FE479799
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169039385|gb|FE449112.1|FE449112
EST:     GAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169101289|gb|FE501977.1|FE501977
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169035699|gb|FE446184.1|FE446184
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169040201|gb|FE448123.1|FE448123
EST:     GAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169039338|gb|FE449091.1|FE449091
EST:     GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
EST: gi|169061224|gb|FE470350.1|FE470350
EST:     GAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAG                         GCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA
genomic: GAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 59

GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacgat ... tcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGAAGTCAGTTCGTGGTTGCATTGTCAGCCATGATCTGTCTGTTCTCAATCT




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