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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACAACTTGCGCAATCACTGATGATCAGgtgaggattgcccgaattttggtccacgaatgtgcatcgatgatggccgcgtagtgagcaatttcgttgcacaggtaagaaggctctttctgctcataccttgtaattcacaacagctttgaacttag

Basic information

species Selaginella moellendorffii
transcript EFJ13895
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ13895 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: PP1S60_124V6.1 (Physcomitrella patens), 5'ss of exon 5
ATTACAACTTGCGCAATCACTGATGATCAGgtgaggattgcccgaattttggtccacgaatgtgcatcgatgatggccgcgtagtgagcaatttcgttgcacaggtaagaaggctctttctgctcataccttgtaattcacaacagctttgaacttag-----------------------------------------------------------------------------------------------------------------------
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-------------------GTGAGGATTGCTCGGATATTCAACACGTATGGACCTA-GAATGTGCATTGACGATGGACGCGTTGTCAGCAACTTCGTTGCACAGgtttg----ctcttctttcctagtgcttggtattagcagtttttttccttctgttatatctatatctatatatttgttttgtttcgaggagtataattatttagatgtgttgcatgcttcagcctgttttcagtagctttggtaggatcggcttctaacactctttgtctcag