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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCATCTGGTCCAGCTCCAAGCGTACTACTACGCCAAGGATGAGAAGCTCCTCGTCTACGACTACATGCCCAATGGCAGCCTCCATAGCTTGCTCCATGgttggttttccattccatctcttcgatcgacgtctaagcttgtgtgatgtctctttctgtag

Basic information

species Selaginella moellendorffii
transcript EFJ13421
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ13421 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: LOC_Os12g05120.1 (Oryza sativa), 5'ss of exon 2
CCGCATCTGGTCCAGCTCCAAGCGTACTACTACGCCAAGGATGAGAAGCTCCTCGTCTACGACTACATGCCCAATGGCAGCCTCCATAGCTTGCTCCATGgttggttttccattc---catctcttcgatcgacgtctaagcttgtgtgat-gtctctttctgtag-----------------------------
||  | || ||||  |||| ||| | ||||||||||||| | |||||||||||| ||||||||||| | |||||||||| |||||||  |   ||||| |||     | |   ||     |||| ||   | |  | | |       |||  ||  |    ||                                
CCAAACCTCGTCCCCCTCCGAGCCTTCTACTACGCCAAGCAGGAGAAGCTCCTCATCTACGACTACCTCCCCAATGGCAACCTCCATGACCGCCTCCACGgtacacatccatgtctgatgtctcctcctcctagctgtgaatcgccatgagagtggcacgatgagctcgatctcgccattgattgtgtttgtcag

upper sequence: EFJ13421 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GRMZM2G046201_T01 (Zea mays), 5'ss of exon 1
CCGCATCTGGTCCAGCTCCAAGCGTACTACTACGCCAAGGATGAGAAGCTCCTCGTCTACGACTACATGCCCAATGGCAGCCTCCATAGCTTGCTCCATGgt---tggttttccattccatctcttcgatcgacgtctaagcttgtgtgatgtctctttctg--tag------------------------------------------------
||||| || |||| ||||   || | ||||||||||| | | |||||||||||| ||||||||||| | |||||||||| ||||||       ||||| |||    |   | |    | | ||  |  |||     |   |||||     || | ||| |     ||                                                
CCGCACCTCGTCCCGCTCAGGGCCTTCTACTACGCCAGGCAGGAGAAGCTCCTCATCTACGACTACCTCCCCAATGGCAACCTCCACGATCGCCTCCACGgtacgcgacctccgccgcaagctggttaatcacttccctcgcttgctaattgccacttgccagtcagtcacacgacactgtctgtcgtccgcttgtctcactcactcactcacag