1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTTGCTCAAGATGATGAACGCCAAGAAGACAATGGAGATTGGAGTCTACACTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatcttagaaagtataaccagccatacctgtgctgacgcggatgcacag
species | Selaginella moellendorffii |
transcript | EFJ11728 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACG GTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTACEST: gi|169066692|gb|FE475448.1|FE475448
genomic: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatctt ... ggatgcacagGTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTAC
EST: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACG GTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTACEST: gi|169106715|gb|FE506752.1|FE506752
genomic: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatctt ... ggatgcacagGTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTAC
EST: CAGCACGGCTCTGGCTCTGCCGGAAGATGGAACG GTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTACEST: gi|169075572|gb|FE481958.1|FE481958
genomic: CAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatctt ... ggatgcacagGTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTAC
EST: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACG GTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTACEST: gi|169059287|gb|FE467468.1|FE467468
genomic: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatctt ... ggatgcacagGTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTAC
EST: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACG GTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTACEST: gi|70670609|gb|DN839186.1|DN839186
genomic: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatctt ... ggatgcacagGTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTAC
EST: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACG GTGCTAGCCATGGACATCAACAGGAAGAACTTTGAGCTCGGCTACCCGTACEST: gi|169108255|gb|FE513564.1|FE513564
genomic: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatctt ... ggatgcacagGTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTAC
EST: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACG GTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTACEST: gi|169107108|gb|FE507262.1|FE507262
genomic: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatctt ... ggatgcacagGTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTAC
EST: CAGCACGGCTCTGGCTCTGCCGGAAGATGGAACG GTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTACEST: gi|169042315|gb|FE452863.1|FE452863
genomic: CAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatctt ... ggatgcacagGTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTAC
EST: CAGCACGGCTTTGGCTTTGCCGGAAGATGGAACG GTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTACEST: gi|169070774|gb|FE477321.1|FE477321
genomic: CAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatctt ... ggatgcacagGTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTAC
EST: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACG GTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTACEST: gi|169065676|gb|FE474344.1|FE474344
genomic: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatctt ... ggatgcacagGTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTAC
EST: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACG GTGCTAGCCATGGACATCAACAGGAAGAACTTTGAGCTCGGCTACCCGTACEST: gi|169115443|gb|FE516184.1|FE516184
genomic: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatctt ... ggatgcacagGTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTAC
EST: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACG GTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTACEST: gi|169075571|gb|FE481957.1|FE481957
genomic: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatctt ... ggatgcacagGTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTAC
EST: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACG GTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTACEST: gi|169107109|gb|FE507263.1|FE507263
genomic: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatctt ... ggatgcacagGTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTAC
EST: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACG GTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTACEST: gi|169036115|gb|FE444622.1|FE444622
genomic: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatctt ... ggatgcacagGTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTAC
EST: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACG GTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTACEST: gi|169104300|gb|FE503714.1|FE503714
genomic: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatctt ... ggatgcacagGTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTAC
EST: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACG GTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTACEST: gi|169115444|gb|FE516185.1|FE516185
genomic: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatctt ... ggatgcacagGTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTAC
EST: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACG GTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTACEST: gi|169104299|gb|FE503713.1|FE503713
genomic: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatctt ... ggatgcacagGTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTAC
EST: CAGCACGGCTCTGGCTCTGCCGGAAGATGGAACG GTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTACEST: gi|169070773|gb|FE477320.1|FE477320
genomic: CAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatctt ... ggatgcacagGTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTAC
EST: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACG GTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTAC
genomic: CTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatctt ... ggatgcacagGTGCTAGCCATGGACATCAACAGGAAGAATTTTGAGCTCGGCTACCCGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGCTCAAGATGATGAACGCCAAGAAGACAATGGAGATTGGAGTCTACACTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgtaaaatcttagaaagtataaccagccatacctgtgctgacgcggatgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA