1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAGGAAGGGATGGAGCGAAAGGATGTCATGTCCAAGAACGTCTCCATCTACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAGgtaacgtagaaatacaaaacgtatcagaagctcatgactgtgggcgtgacag
species | Selaginella moellendorffii |
transcript | EFJ10745 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAG GTTCTGGTGGTTGCTAATCCAGCCAATACAAATGCGCTGATCCTCAAGGAGEST: gi|169063460|gb|FE471462.1|FE471462
genomic: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAGgtaacgtaga ... ggcgtgacagGTTCTGGTGGTTGCTAATCCTGCCAATACTAATGCGCTGATCCTCAAGGAG
EST: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAG GTTCTGGTGGTTGCTAATCCTGCCAATACTAATGCGCTGATCCTCAAGGAGEST: gi|169107612|gb|FE514273.1|FE514273
genomic: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAGgtaacgtaga ... ggcgtgacagGTTCTGGTGGTTGCTAATCCTGCCAATACTAATGCGCTGATCCTCAAGGAG
EST: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAG GTTCTGGTGGTTGCTAATCCAGCCAATACAAATGCGCTGATCCTCAAGGAGEST: gi|169094562|gb|FE494514.1|FE494514
genomic: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAGgtaacgtaga ... ggcgtgacagGTTCTGGTGGTTGCTAATCCTGCCAATACTAATGCGCTGATCCTCAAGGAG
EST: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAG GTTCTGGTGGTTGCTAATCCTGCCAATACTAATGCGCTGATCCTCAAGGAGEST: gi|169071244|gb|FE477882.1|FE477882
genomic: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAGgtaacgtaga ... ggcgtgacagGTTCTGGTGGTTGCTAATCCTGCCAATACTAATGCGCTGATCCTCAAGGAG
EST: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAG GTTCTGGTGGTTGCTAATCCAGCCAATACAAATGCGCTGATCCTCAAGGAGEST: gi|169094548|gb|FE494513.1|FE494513
genomic: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAGgtaacgtaga ... ggcgtgacagGTTCTGGTGGTTGCTAATCCTGCCAATACTAATGCGCTGATCCTCAAGGAG
EST: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAG GTTCTGGTGGTTGCTAATCCTGCCAATACTAATGCGCTGATCCTCAAGGAGEST: gi|169071243|gb|FE477881.1|FE477881
genomic: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAGgtaacgtaga ... ggcgtgacagGTTCTGGTGGTTGCTAATCCTGCCAATACTAATGCGCTGATCCTCAAGGAG
EST: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAG GTTCTGGTGGTTGCTAATCCAGCCAATACAAATGCGCTGATCCTCAAGGAGEST: gi|169029856|gb|FE441050.1|FE441050
genomic: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAGgtaacgtaga ... ggcgtgacagGTTCTGGTGGTTGCTAATCCTGCCAATACTAATGCGCTGATCCTCAAGGAG
EST: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAG GTTCTGGTGGTTGCTAATCCTGCCAATACTAATGCGCTGATCCTCAAGGAGEST: gi|169063459|gb|FE471461.1|FE471461
genomic: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAGgtaacgtaga ... ggcgtgacagGTTCTGGTGGTTGCTAATCCTGCCAATACTAATGCGCTGATCCTCAAGGAG
EST: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAG GTTCTGGTGGTTGCTAATCCTGCCAATACTAATGCGCTGATCCTCAAGGAGEST: gi|169062860|gb|FE472363.1|FE472363
genomic: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAGgtaacgtaga ... ggcgtgacagGTTCTGGTGGTTGCTAATCCTGCCAATACTAATGCGCTGATCCTCAAGGAG
EST: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAG GTTCTGGTGGTTGCTAATCCTGCCAATACTAATGCGCTGATCCTCAAGGAGEST: gi|169062861|gb|FE472364.1|FE472364
genomic: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAGgtaacgtaga ... ggcgtgacagGTTCTGGTGGTTGCTAATCCTGCCAATACTAATGCGCTGATCCTCAAGGAG
EST: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAG GTTCTGGTGGTTGCTAATCCTGCCAATACTAATGCGCTGATCCTCAAGGAGEST: gi|169058484|gb|FE466381.1|FE466381
genomic: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAGgtaacgtaga ... ggcgtgacagGTTCTGGTGGTTGCTAATCCTGCCAATACTAATGCGCTGATCCTCAAGGAG
EST: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAG GTTCTGGTGGTTGCTAATCCAGCCAATACAAATGCGCTGATCCTCAAGGAG
genomic: ACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAGgtaacgtaga ... ggcgtgacagGTTCTGGTGGTTGCTAATCCTGCCAATACTAATGCGCTGATCCTCAAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGGAAGGGATGGAGCGAAAGGATGTCATGTCCAAGAACGTCTCCATCTACAAGTCTCAAGCTTCTGCTCTTGAAAAGTGTGCTGCCAAGGACGTGAAGgtaacgtagaaatacaaaacgtatcagaagctcatgactgtgggcgtgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC