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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGAGCACAAGTCGATAAGGTTTCGTTTTCCTGAAGCTGGACGGAGTGGTCGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAGgttagctttcttttttatttgtatcatcccgtgctcatcagtctcgctttgtgtgcag

Basic information

species Selaginella moellendorffii
transcript EFJ10635
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169056801|gb|FE465404.1|FE465404
EST:     GTCGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAG                         GTTTTGTTCAAAAAGGCAAACATGAATGTGGAAAGAGGCGAGAAACTGGCA
genomic: GTCGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAGgttagctttc ... ttgtgtgcagGTTTTGTTCAAAAAGGCAAACATGAATGTGGAAAGAGGCGAGAAACTGGCA
EST: gi|169078770|gb|FE489620.1|FE489620
EST:     GTCGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAG                         GTTTTGTTCAAAA-GTGCAAACATGAATGTGGAAAGAGGCGAGAAACTTGC
genomic: GTCGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAGgttagctttc ... ttgtgtgcagGTTTTGTTCAAAAAG-GCAAACATGAATGTGGAAAGAGGCGAGAAACTGGC
EST: gi|169105691|gb|FE508457.1|FE508457
EST:     CGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAG                         GTTTTGTTCAAAAAGGCAAACATGAATGTGGAAAGAGGCGAGAAACTGGCA
genomic: CGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAGgttagctttc ... ttgtgtgcagGTTTTGTTCAAAAAGGCAAACATGAATGTGGAAAGAGGCGAGAAACTGGCA
EST: gi|169115176|gb|FE515605.1|FE515605
EST:     GTCGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAG                         GTTTTGTTCAAAAAGGCAAACATGAATGTGGAAAGAGGCGAGAAACTGGCA
genomic: GTCGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAGgttagctttc ... ttgtgtgcagGTTTTGTTCAAAAAGGCAAACATGAATGTGGAAAGAGGCGAGAAACTGGCA
EST: gi|70671002|gb|DN839579.1|DN839579
EST:     GTCGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAG                         GTTTTGTTCAAAA-GTGCAAACATGAATGTGGAAAGAGGCGAGAAACTTGC
genomic: GTCGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAGgttagctttc ... ttgtgtgcagGTTTTGTTCAAAAAG-GCAAACATGAATGTGGAAAGAGGCGAGAAACTGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 9 (upstream exon), 29 (downstream exon)
Score: 7

TTTTGAGCACAAGTCGATAAGGTTTCGTTTTCCTGAAGCTGGACGGAGTGGTCGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAGgttagctttc ... ttgtgtgcagGTTTTGTTCAAAAAGGCAAACATGAATGTGGAAAGAGGCGAGAAACTGGCAATTATAGGTCCAAATGGTTGTGGCAAGAGCACCTTACTGCGCCTGATTC




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