1 5' 3' | 2 5' 3' | 3 5' 3' |
TCCGGCACAGAACGTCGAGAGCTCGCAGTGCTTGACACTCATGGAGGCAACCAACTGTGGCAAGGATCTCTACGTGTCGGTGACAATGCCATCGGTGGAGgtacgctgaagtttcaaaagttttcctgtttgtttatctctctgctggtgctttggtctaaccaagctttttctttctcttgctttttgcttgcacag
species | Selaginella moellendorffii |
transcript | EFJ10313 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCAACTGTGGCAAGGATCTCTACGTGTCGGTGACAATGCCATCGGTGGAG GTTGGAACGATCGGTGGTGGCACGCAGCTCGCGTCGCAGAGCGCTTGTCTCEST: gi|169044244|gb|FE452974.1|FE452974
genomic: CCAACTGTGGCAAGGATCTCTACGTGTCGGTGACAATGCCATCGGTGGAGgtacgctgaa ... gcttgcacagGTTGGAACGATCGGTGGTGGCACGCAGCTCGCGTCGCAGAGCGCTTGTCTC
EST: CCAACTGTGGCAAGGATCTCTACGTGTCGGTGACAATGCCATCGGTGGAG GTTGGAACGATCGGTGGTGGCACGCAGCTCGCGTCGCAGAGCGCTTGTCTCEST: gi|169082493|gb|FE490030.1|FE490030
genomic: CCAACTGTGGCAAGGATCTCTACGTGTCGGTGACAATGCCATCGGTGGAGgtacgctgaa ... gcttgcacagGTTGGAACGATCGGTGGTGGCACGCAGCTCGCGTCGCAGAGCGCTTGTCTC
EST: CCAACTGTGGCAAGGATCTCTACGTGTCGGTGACAATGCCATCGGTGGAG GTTGGAACGATCGGTGGTGGCACGCAGCTCGCGTCGCAGAGCGCTTGTCTC
genomic: CCAACTGTGGCAAGGATCTCTACGTGTCGGTGACAATGCCATCGGTGGAGgtacgctgaa ... gcttgcacagGTTGGAACGATCGGTGGTGGCACGCAGCTCGCGTCGCAGAGCGCTTGTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCGGCACAGAACGTCGAGAGCTCGCAGTGCTTGACACTCATGGAGGCAACCAACTGTGGCAAGGATCTCTACGTGTCGGTGACAATGCCATCGGTGGAGgtacgctgaagtttcaaaagttttcctgtttgtttatctctctgctggtgctttggtctaaccaagctttttctttctcttgctttttgcttgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG