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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCTCGACACGAATCAATACTTCCAGGCAATGCAGCAAGTTATGCAAAACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAGgtagtgtttggaagctctattgtctcaagcttttgtttctctgttttccag

Basic information

species Selaginella moellendorffii
transcript EFJ08399
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169087065|gb|FE495157.1|FE495157
EST:     ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
EST: gi|169101055|gb|FE500643.1|FE500643
EST:     ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
EST: gi|169058746|gb|FE464784.1|FE464784
EST:     ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
EST: gi|169043618|gb|FE452686.1|FE452686
EST:     ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
EST: gi|169115002|gb|FE516367.1|FE516367
EST:     ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
EST: gi|169062456|gb|FE469515.1|FE469515
EST:     ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
EST: gi|169048081|gb|FE456796.1|FE456796
EST:     ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
EST: gi|169065055|gb|FE474503.1|FE474503
EST:     ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
EST: gi|169023042|gb|FE431590.1|FE431590
EST:     CAATGCTCTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: CAATGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
EST: gi|169063746|gb|FE472476.1|FE472476
EST:     ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
EST: gi|169108039|gb|FE511021.1|FE511021
EST:     ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
EST: gi|169099405|gb|FE500488.1|FE500488
EST:     ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
EST: gi|169072467|gb|FE483863.1|FE483863
EST:     ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
EST: gi|169072466|gb|FE483862.1|FE483862
EST:     TGCTCTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: TGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
EST: gi|169067484|gb|FE475239.1|FE475239
EST:     ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
EST: gi|169062455|gb|FE469514.1|FE469514
EST:     CGCCTTGGCAATGCTTTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: CGCCTTGGCAATGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
EST: gi|169106627|gb|FE504649.1|FE504649
EST:     ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
EST: gi|169087066|gb|FE495158.1|FE495158
EST:     ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
EST: gi|169058747|gb|FE464785.1|FE464785
EST:     TGGCAATTGCTCTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: TGGCAA-TGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
EST: gi|169108040|gb|FE511022.1|FE511022
EST:     ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
EST: gi|169023043|gb|FE431591.1|FE431591
EST:     ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAG                         GATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG
genomic: ACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 102

ACAGCTCGACACGAATCAATACTTCCAGGCAATGCAGCAAGTTATGCAAAACCCACAGTTCATGAGCATGGCGGAGCGCCTTGGCAATGCTCTCATGCAGgtagtgtttg ... tgttttccagGATCCATCCATGGCAGCAATGCTCCAGAACATGACTAATCCAGCTCATAAGGAGCAACTCGAGGCACGCATGTCGCAAATCAGAGAGGATCCCGCTTTGA




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