1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTGCTCGGCACATATGTTGTGGATTGGAGAGCGCACGCGACAACTCGACGGAGCACACATTGAGTTCCTCCGAGGAGTAGCAAATCCCATTGGTGTTAAGgtacgcgttatctatctcttccttgtatccaatacctgacttctttgactcgcag
species | Selaginella moellendorffii |
transcript | EFJ08096 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCACACA-TGNAGTTCCTCCGAGGAGTAGCAAATCCCATTGGTGTTAAG GTAAGTGACAAGATGGACCCCAACGAGCTGGTCAAGCTCATCGACATCCTGEST: gi|169075832|gb|FE482803.1|FE482803
genomic: AGCACACATTG-AGTTCCTCCGAGGAGTAGCAAATCCCATTGGTGTTAAGgtacgcgtta ... tgactcgcagGTAAGTGACAAGATGGACCCCAACGAGCTGGTCAAGCTCATCGACATCCTG
EST: GAGCACACATTGAGTTCCTCCGAGGAGTAGCAAATCCCATTGGTGTTAAG GTAAGTGACAAGATGGACCCCAACGAGCTGGTCAAGCTCATCGACATCCTGEST: gi|169113101|gb|FE514957.1|FE514957
genomic: GAGCACACATTGAGTTCCTCCGAGGAGTAGCAAATCCCATTGGTGTTAAGgtacgcgtta ... tgactcgcagGTAAGTGACAAGATGGACCCCAACGAGCTGGTCAAGCTCATCGACATCCTG
EST: GAGCACACATTGAGTTCCTCCGAGGAGTAGCAAATCCCATTGGTGTTAAG GTAAGTGACAAGATGGACCCCAACGAGCTGGTCAAGCTCATCGACATCCTG
genomic: GAGCACACATTGAGTTCCTCCGAGGAGTAGCAAATCCCATTGGTGTTAAGgtacgcgtta ... tgactcgcagGTAAGTGACAAGATGGACCCCAACGAGCTGGTCAAGCTCATCGACATCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCTCGGCACATATGTTGTGGATTGGAGAGCGCACGCGACAACTCGACGGAGCACACATTGAGTTCCTCCGAGGAGTAGCAAATCCCATTGGTGTTAAGgtacgcgttatctatctcttccttgtatccaatacctgacttctttgactcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG