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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAAAGGACGTCGTGGGTGTGGCCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACTgtgagtccgagaaagtagagaactttttcttttcttctttcgtggcactcgtaaatcatccactgtatcag

Basic information

species Selaginella moellendorffii
transcript EFJ07797
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169076719|gb|FE485554.1|FE485554
EST:     CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACT                         GTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
genomic: CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACTgtgagtccga ... actgtatcagGTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
EST: gi|169077950|gb|FE489853.1|FE489853
EST:     CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACT                         GTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
genomic: CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACTgtgagtccga ... actgtatcagGTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
EST: gi|169055122|gb|FE462998.1|FE462998
EST:     CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACT                         GTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
genomic: CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACTgtgagtccga ... actgtatcagGTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
EST: gi|169062633|gb|FE470303.1|FE470303
EST:     CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACT                         GTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
genomic: CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACTgtgagtccga ... actgtatcagGTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
EST: gi|169102265|gb|FE506528.1|FE506528
EST:     CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACT                         GTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
genomic: CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACTgtgagtccga ... actgtatcagGTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
EST: gi|169049216|gb|FE459492.1|FE459492
EST:     CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACT                         GTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
genomic: CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACTgtgagtccga ... actgtatcagGTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
EST: gi|169049585|gb|FE457729.1|FE457729
EST:     CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACT                         GTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
genomic: CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACTgtgagtccga ... actgtatcagGTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
EST: gi|169044392|gb|FE453330.1|FE453330
EST:     CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACT                         GTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
genomic: CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACTgtgagtccga ... actgtatcagGTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
EST: gi|169049584|gb|FE457728.1|FE457728
EST:     CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACT                         GTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
genomic: CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACTgtgagtccga ... actgtatcagGTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
EST: gi|169077949|gb|FE489852.1|FE489852
EST:     CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACT                         GTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
genomic: CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACTgtgagtccga ... actgtatcagGTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
EST: gi|169047574|gb|FE455158.1|FE455158
EST:     CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACT                         GTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
genomic: CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACTgtgagtccga ... actgtatcagGTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
EST: gi|169049215|gb|FE459491.1|FE459491
EST:     CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACT                         GTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
genomic: CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACTgtgagtccga ... actgtatcagGTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
EST: gi|169048029|gb|FE456029.1|FE456029
EST:     CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACT                         GTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
genomic: CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACTgtgagtccga ... actgtatcagGTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
EST: gi|169076720|gb|FE485555.1|FE485555
EST:     CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACT                         GTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
genomic: CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACTgtgagtccga ... actgtatcagGTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
EST: gi|169036384|gb|FE445749.1|FE445749
EST:     CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACT                         GTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
genomic: CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACTgtgagtccga ... actgtatcagGTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
EST: gi|169102264|gb|FE506527.1|FE506527
EST:     CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACT                         GTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC
genomic: CCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACTgtgagtccga ... actgtatcagGTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 110

TTAAAGGACGTCGTGGGTGTGGCCTCGAGCTATCAATCCAGGATCCTTGCTCGTCAGTATGGCGTGAAAACTgtgagtccga ... actgtatcagGTTGATTTGAATGACGTGAATGTGATCGATTTTGCCTTCGACGGAGCCGACGAAGTGGATGCCTCCATGAACTTGATCAAG




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