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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGATCCATTTTTCTACGTGCGAAGTGTATGGAAAAACGATTGGAAGCTTTTTGCCCGAGGACAGTTCCTTGAGGAAGGCATGTATTTTGTTTTTCCTGgtgatctctatccagtttctcttcgtctgactttaccttttcttctatcgtgtttttttattctgttcgtggcgacag

Basic information

species Selaginella moellendorffii
transcript EFJ07025
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ07025 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA12G30490.2 (Glycine max), 5'ss of exon 3
---------------------CTTGATCCATTTTTCTACGTGCGAAGTGTATGGAAAAACGATTGGAAGCTTTTTGCCCGAGGACAGTTCCTTGAGGAAGGCATGTATTTTGTTTTTCCTG-
                       | || ||||| |||||||| ||||| ||||| |||||||||||||||||  | ||| | || ||| |  |  |  |||   |  |||   |||   ||    | | |     |  || | | | |    |  |   |   ||    | |    ||  |   |  | ||||   | ||     
CTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGTGAAGTCTATGGGAAAACGATTGGAAGCTTCCTCCCCAAAGATAGTCCTCTTCGTCAGgtgagc-tttcactttcgttgaagcgaggtactactatagatctgtgtataaccaatgatgatttcaaatttgcaatgcatcaatggtttgttatttagca----

upper sequence: EFJ07025 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: GLYMA12G08930.1 (Glycine max), 5'ss of exon 3
---------------------CTTGATCCATTTTTCTACGTGCGAAGTGTATGGAAAAACGATTGGAAGCTTTTTGCCCGAGGACAGTTCCTTGAGGAAGGCATGTATTTTGTTTTTCCTGgtgatctctatccagtttctcttcgtctgactttaccttttcttctatcgtgtttttttattctgttcgtggcgacag------
                     | | |||||||| ||||| ||||||||||| ||||| |||||||||  |||| | ||  | || ||| |  |  | ||||      |||||  |||  |     |||  | ||  ||  | ||     |  ||| |   |   |  ||  ||   | |  || ||    | ||   |       
CTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGCGAAGTGTACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttttgaattttat-----tcttgacccgtttcttttttaagagtgtttccagatctgtgcattctgagctgtggttttgcgttttgcattaatttgga

upper sequence: EFJ07025 (Selaginella moellendorffii), 5'ss of exon 3
lower sequence: AT2G27860.1 (Arabidopsis thaliana), 5'ss of exon 3
---------------------CTTGATCCATTTTTCTACGTGCGAAGTGTATGGAAAAACGATTGGAAGCTTTTTGCCCGAGGACAGTTCCTTGAG-GAAGGCATGTATTTTGTTTTTCCTGgtgatctctatccagtttctcttcgtctgactttaccttttcttctatcgtgtttttttattctgttcgtggcgacag
                       | || || |||||||| || ||||| ||||||||||| |||||||||||| | ||  ||||   | |  || | || |  |||  ||||  |     | |   ||   ||    ||    ||      |  | | |  |   | ||  | |     |  |   | |   |    |  
CTGTTCTGAGAACAACAAGCGTCTCATTCACTTTTCTACCTGTGAAGTTTATGGAAAAACCATTGGAAGCTTTCTTCCTAAGGATCATCCTCTGCGTGATgtaatgcctttttgtacatttcgctttccacatgttattgtctttttatcaatctcatcgatgaatgtactgaggaacatgttgaagctgacgttttcgt