1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' |
CATAATGTGGCTGCTTCACCTTTGTGACGCCCACCAAGAAATGCAGTCGTGGGCCGAAGCTGCGGAGTGTGCTGTAGCCGTAGCGGGCGTCATTATGCAGgtatagtttagctgcaagggctaccgttgcatgttcacactgacgcatgggtgtctacag
species | Selaginella moellendorffii |
transcript | EFJ04870 |
intron # | 28 |
splice site | 5' |
intron type | U2 |
EST: GGGCCGAAGCTGCGGAGTGTGCTGTAGCCGTAGCGGGCGTCATTATGCAG GCTTTGGTAGCGAGAAATGATTTAGTTTGGGGGCGAGATAATCTGGAGGCGEST: gi|169022755|gb|FE429756.1|FE429756
genomic: GGGCCGAAGCTGCGGAGTGTGCTGTAGCCGTAGCGGGCGTCATTATGCAGgtatagttta ... gtgtctacagGCTTTGGTAGCGAGAAATGATTTAGTTTGGGGGCGAGATAATCTGGAGGCG
EST: GGGCCGAAGCTGCGGAGTGTGCTGTAGCCGTAGCGGGCGTCATTATGCAG GCTTTGGTAGCGAGAAATGATTTAGTTTGGGGGCGAGATAATCTGGAGGCGEST: gi|169096730|gb|FE499746.1|FE499746
genomic: GGGCCGAAGCTGCGGAGTGTGCTGTAGCCGTAGCGGGCGTCATTATGCAGgtatagttta ... gtgtctacagGCTTTGGTAGCGAGAAATGATTTAGTTTGGGGGCGAGATAATCTGGAGGCG
EST: GGGCCGAAGCTGCGGAGTGTGCTGTAGCCGTAGCGGGCGTCATTATGCAG GCTTTGGTAGCGAGAAATGATTTAGTTTGGGGGCGAGATAATCTGGAGGCGEST: gi|169116050|gb|FE517413.1|FE517413
genomic: GGGCCGAAGCTGCGGAGTGTGCTGTAGCCGTAGCGGGCGTCATTATGCAGgtatagttta ... gtgtctacagGCTTTGGTAGCGAGAAATGATTTAGTTTGGGGGCGAGATAATCTGGAGGCG
EST: GGGCCGAAGCTGCGGAGTGTGCTGTAGCCGTAGCGGGCGTGATTATGCAG GCTTTGGTAGCGAGAAACGATTTAGTTTGGGGGCGAGATAATCTGGAGGCGEST: gi|169022809|gb|FE430213.1|FE430213
genomic: GGGCCGAAGCTGCGGAGTGTGCTGTAGCCGTAGCGGGCGTCATTATGCAGgtatagttta ... gtgtctacagGCTTTGGTAGCGAGAAATGATTTAGTTTGGGGGCGAGATAATCTGGAGGCG
EST: GGGCCGAAGCTGCGGAGTGTGCTGTAGCCGTAGCGGGCGTCATTATGCAG GCTTTGGTAGCGAGAAATGATTTAGTTTGGGGGCGAGATAATCTGGAGGCG
genomic: GGGCCGAAGCTGCGGAGTGTGCTGTAGCCGTAGCGGGCGTCATTATGCAGgtatagttta ... gtgtctacagGCTTTGGTAGCGAGAAATGATTTAGTTTGGGGGCGAGATAATCTGGAGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATAATGTGGCTGCTTCACCTTTGTGACGCCCACCAAGAAATGCAGTCGTGGGCCGAAGCTGCGGAGTGTGCTGTAGCCGTAGCGGGCGTCATTATGCAGgtatagtttagctgcaagggctaccgttgcatgttcacactgacgcatgggtgtctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC