1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
ATGGCCAAAGCTCTCTGGCAGCGATGGTGAAGACGAGCCACCGCCAACGAAGAAAAAGAAGCAATCGGCAGCAGTGGATGCTGCGTACACACCTCATCCTgtaagttcttgcaagtttcgtttttctagttcttcgcgagttcactcacttgtttttgtttccttgcggtgcag
species | Selaginella moellendorffii |
transcript | EFJ06565 |
intron # | 24 |
splice site | 5' |
intron type | U2 |
EST: AGAAAAAGAAGCAATCGGCAGCAGTGGATGCTGCGTACACACCTCATCCT AAGAAGAAAAGAAGGTAGCAAAGCAGCAGTGTTTCTGAATGGTGACGATAAEST: gi|169104705|gb|FE508979.1|FE508979
genomic: AGAAAAAGAAGCAATCGGCAGCAGTGGATGCTGCGTACACACCTCATCCTgtaagttctt ... tgcggtgcagAAGAAGAAACGAAGGTAGCAAAGCAGCAGTGTTTCTGAATGGTAACGATAA
EST: AGAAAAAGAAGCAATCGGCAGCAGTGGATGCTGCGTACACACCTCATCCT AAGAAGAAAAGAAGGTAGCAAAGCAGCAGTGTTTCTGAATGGTGACGATAAEST: gi|70669123|gb|DN837700.1|DN837700
genomic: AGAAAAAGAAGCAATCGGCAGCAGTGGATGCTGCGTACACACCTCATCCTgtaagttctt ... tgcggtgcagAAGAAGAAACGAAGGTAGCAAAGCAGCAGTGTTTCTGAATGGTAACGATAA
EST: AGAAAAAGAAGCAATCGGCAGCAGTGGATGCTGCGTACACTCCTCATCCT AAGAAGAAAAGAAGGTAGCAAAGCAGCAGTGTTTCTGAATGGTGACGATAAEST: gi|169107315|gb|FE504141.1|FE504141
genomic: AGAAAAAGAAGCAATCGGCAGCAGTGGATGCTGCGTACACACCTCATCCTgtaagttctt ... tgcggtgcagAAGAAGAAACGAAGGTAGCAAAGCAGCAGTGTTTCTGAATGGTAACGATAA
EST: AGAAAAAGAAGCAATCGGCAGCAGTGGATGCTGCGTACACACCTCATCCT AAGAAGAAACGAAGGTAGCAAAGCAGCAGTGTTTCTGAATGGTAACGATAA
genomic: AGAAAAAGAAGCAATCGGCAGCAGTGGATGCTGCGTACACACCTCATCCTgtaagttctt ... tgcggtgcagAAGAAGAAACGAAGGTAGCAAAGCAGCAGTGTTTCTGAATGGTAACGATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGCCAAAGCTCTCTGGCAGCGATGGTGAAGACGAGCCACCGCCAACGAAGAAAAAGAAGCAATCGGCAGCAGTGGATGCTGCGTACACACCTCATCCTgtaagttcttgcaagtttcgtttttctagttcttcgcgagttcactcacttgtttttgtttccttgcggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC