1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' |
GTTTGGGCTTGGAGACTTCACCTGGAGCAGTTTCGTTCCTTATTTTAAGCAAAAACAGCTTCACGAGATCAAAGAgtatttctaacgagaccttatgcgatgattctgataggcttgctgtcag
species | Selaginella moellendorffii |
transcript | EFJ15143 |
intron # | 23 |
splice site | 5' |
intron type | U2 |
EST: AGCAGTTTCGTTCCTTATTTTAAGCAAAAGCAGCTTCACGAGATCAAAGA GTATGGTACCCTCTTTTTGACGCACATTGCAGAAGATGTTACAGACTCAGAEST: gi|169021424|gb|FE428537.1|FE428537
genomic: AGCAGTTTCGTTCCTTATTTTAAGCAAAAACAGCTTCACGAGATCAAAGAgtatttctaa ... ttgctgtcagGTATGGTACCCTCTTTTTGACGCACATTGCAGAAGATGTTACAGACTCAGA
EST: AGCAGTTTCGTTCCTTATTTTAAGCAAAAACAGCTTCACGAGATCAAAGA GTATGGTACCCTCTTTTTGACGCACATTGCAGAAGATGTTACAGACTCAGAEST: gi|169025392|gb|FE436006.1|FE436006
genomic: AGCAGTTTCGTTCCTTATTTTAAGCAAAAACAGCTTCACGAGATCAAAGAgtatttctaa ... ttgctgtcagGTATGGTACCCTCTTTTTGACGCACATTGCAGAAGATGTTACAGACTCAGA
EST: AGCAGTTTCGTTCCTTATTTTAAGCAAAAACAGCTTCACGAGATCAAAGA GTATGGTACCCTCTTTTTGACGCACATTGCAGAAGATGTTACAGACTCAGAEST: gi|169067959|gb|FE473465.1|FE473465
genomic: AGCAGTTTCGTTCCTTATTTTAAGCAAAAACAGCTTCACGAGATCAAAGAgtatttctaa ... ttgctgtcagGTATGGTACCCTCTTTTTGACGCACATTGCAGAAGATGTTACAGACTCAGA
EST: GTTTCGTTCCTTATTTTAAGCAAAAGCAGCTTCACGAGATCAAAGA GTATGGTACCCTCTTTTTGACGCACATTGCAGAAGATGTTACAGACTCAGAEST: gi|169098304|gb|FE499933.1|FE499933
genomic: GTTTCGTTCCTTATTTTAAGCAAAAACAGCTTCACGAGATCAAAGAgtatttctaa ... ttgctgtcagGTATGGTACCCTCTTTTTGACGCACATTGCAGAAGATGTTACAGACTCAGA
EST: AGCAGTTTCGTTCCTTATTTTAAGCAAAAGCAGCTTCACGAGATCAAAGA GTATGGTACCCTCTTTTTGACGCACATTGCAGAAGATGTTACAGACTCAGA
genomic: AGCAGTTTCGTTCCTTATTTTAAGCAAAAACAGCTTCACGAGATCAAAGAgtatttctaa ... ttgctgtcagGTATGGTACCCTCTTTTTGACGCACATTGCAGAAGATGTTACAGACTCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGGGCTTGGAGACTTCACCTGGAGCAGTTTCGTTCCTTATTTTAAGCAAAAACAGCTTCACGAGATCAAAGAgtatttctaacgagaccttatgcgatgattctgataggcttgctgtcag
- - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA