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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCATCCACGGTACAATCGGTTGTAGAGATTGAGCGCGTTGTGTACTATCGCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaatatttaccatcttgcatggttttaatccttggaacttttatctcttccag

Basic information

species Selaginella moellendorffii
transcript EFJ15243
intron # 22
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169113776|gb|FE515350.1|FE515350
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169054551|gb|FE462635.1|FE462635
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAN                         GTGATTTAT-GAGCTTCCTCACGTA
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATT-ATTGAGCTTCCTCACGTA
EST: gi|169083757|gb|FE494879.1|FE494879
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169070836|gb|FE477331.1|FE477331
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169102676|gb|FE504469.1|FE504469
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAA
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAA
EST: gi|169029239|gb|FE439419.1|FE439419
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169075226|gb|FE484108.1|FE484108
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169029020|gb|FE437523.1|FE437523
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169073774|gb|FE484008.1|FE484008
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCCTCCA-GCCGTGCTACACGTCGC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCC-TCCAAGCCGTGCTACACGTCGC
EST: gi|169040162|gb|FE448110.1|FE448110
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169045962|gb|FE453937.1|FE453937
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169056043|gb|FE465595.1|FE465595
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169026959|gb|FE432425.1|FE432425
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169050953|gb|FE458123.1|FE458123
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169114225|gb|FE515760.1|FE515760
EST:     GCATTTTCATACGGGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGGC
genomic: GCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169053467|gb|FE461806.1|FE461806
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169067468|gb|FE475743.1|FE475743
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169081884|gb|FE486938.1|FE486938
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169108860|gb|FE509177.1|FE509177
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169102675|gb|FE504468.1|FE504468
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169027003|gb|FE432443.1|FE432443
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169057172|gb|FE464683.1|FE464683
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169063555|gb|FE471973.1|FE471973
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|70670514|gb|DN839091.1|DN839091
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169093329|gb|FE491853.1|FE491853
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169106690|gb|FE506740.1|FE506740
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169047224|gb|FE456473.1|FE456473
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169032720|gb|FE438280.1|FE438280
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169065271|gb|FE473172.1|FE473172
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169067467|gb|FE475742.1|FE475742
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169106885|gb|FE505492.1|FE505492
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169033141|gb|FE441473.1|FE441473
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169065272|gb|FE473173.1|FE473173
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169096152|gb|FE500312.1|FE500312
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169029238|gb|FE439418.1|FE439418
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169075225|gb|FE484107.1|FE484107
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169023612|gb|FE430600.1|FE430600
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
EST: gi|169096153|gb|FE500313.1|FE500313
EST:     GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAG                         GTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC
genomic: GCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 33

CGCATCCACGGTACAATCGGTTGTAGAGATTGAGCGCGTTGTGTACTATCGCGAGAAAGCCGCTGGCCTCTACTCGGCATTCTCATACGTGATTGCTCAGgttaagcaat ... tctcttccagGTGATTATTGAGCTTCCTCACGTATTCCTCCAAGCCGTGCTACACGTCGCCATTACTTACCCCGCGGTGAATCTCGAGTGGACGGCCGCCAAGTTTATGT




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