Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTGATCCCTCCAAGAGACTAGGAGGTTTAAACGGAGCATACGAAATCAAGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATGgtttgtttcttccttcgccttgaaaaatcgaagaagaactaactgggtttgattctatag

Basic information

species Selaginella moellendorffii
transcript EFJ07343
intron # 22
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169030747|gb|FE440862.1|FE440862
EST:     AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATG                         CCGGCGCCAGAGCTCGACACTCCAATCCAATTCATTGACAAAAACGCAGAA
genomic: AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATGgtttgtttct ... gattctatagCCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
EST: gi|169033080|gb|FE441412.1|FE441412
EST:     AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATG                         CCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
genomic: AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATGgtttgtttct ... gattctatagCCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
EST: gi|169063067|gb|FE471173.1|FE471173
EST:     AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATG                         CCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
genomic: AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATGgtttgtttct ... gattctatagCCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
EST: gi|169057926|gb|FE465524.1|FE465524
EST:     AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATG                         CCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
genomic: AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATGgtttgtttct ... gattctatagCCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
EST: gi|169039425|gb|FE447267.1|FE447267
EST:     AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATG                         CCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
genomic: AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATGgtttgtttct ... gattctatagCCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
EST: gi|169052749|gb|FE461166.1|FE461166
EST:     AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATG                         CCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
genomic: AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATGgtttgtttct ... gattctatagCCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
EST: gi|169115293|gb|FE517009.1|FE517009
EST:     AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATG                         CCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
genomic: AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATGgtttgtttct ... gattctatagCCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
EST: gi|169046222|gb|FE456381.1|FE456381
EST:     AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTTTCATACGCTGCATG                         CCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
genomic: AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATGgtttgtttct ... gattctatagCCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
EST: gi|169030319|gb|FE440044.1|FE440044
EST:     AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATG                         CCGGCGCCAGAGCTCGACACTCCAATCCAATTCATTGACAAAAACGCAGAA
genomic: AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATGgtttgtttct ... gattctatagCCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
EST: gi|169024980|gb|FE433813.1|FE433813
EST:     AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATG                         CCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
genomic: AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATGgtttgtttct ... gattctatagCCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
EST: gi|169086883|gb|FE496145.1|FE496145
EST:     AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATG                         CCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
genomic: AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATGgtttgtttct ... gattctatagCCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
EST: gi|169024987|gb|FE434639.1|FE434639
EST:     AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATG                         CCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
genomic: AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATGgtttgtttct ... gattctatagCCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
EST: gi|169036319|gb|FE444696.1|FE444696
EST:     AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATG                         CCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA
genomic: AGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATGgtttgtttct ... gattctatagCCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 30 (downstream exon)
Score: 39

ACGTGATCCCTCCAAGAGACTAGGAGGTTTAAACGGAGCATACGAAATCAAGCGACATCCTTTCTTCACCGGTATCAACTGGCCTCTCATACGCTGCATGgtttgtttct ... gattctatagCCGGCACCAGAGCTCGACACTCCAATCCAATTCATTAACAAAAACGCAGAACCAGCGGCCACCAAAGATGAGAACTACGCTGACGTTTTCTAGGAGGCCA




<











<


<