1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
AGGATTGCTTGATTGGCGAGCCGGTGGCCGAAACGGTTTGTGCCAGCAAATGAAGTGGAACGAATCCGAGGCATCAGTTGGGCGAGTCTTAGCCGTCGAGgttcgtccttctctctattatgagttaacgccaagcgctctaacaaccctgctctataacag
species | Selaginella moellendorffii |
transcript | EFJ24089 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: TGAAGTGGAACGAATCCGAGGCATCAGTTGGGCGAGTCTTAGCCGTCGAG ATTCTACGTGCCTTTGCCGAGGAAGGCGCTCACTCTGCCAGAGTTCAGGAGEST: gi|169053613|gb|FE462823.1|FE462823
genomic: TGAAGTGGAACGAATCCGAGGCATCAGTTGGGCGAGTCTTAGCCGTCGAGgttcgtcctt ... tctataacagATTCTACGTGCCTTTGCCGAGGAAGGCGCTCACTCTGCCAGAGTTCAGGAG
EST: TGAAGTGGAACGAATCCGAGGCATCAGTTGGGCGAGTCTTAGCCGTCGAG ATTCTACGTGCCTTTGCCGAGGAAGGCGCTCACTCTGCCAGAGTTCAGGAGEST: gi|169087285|gb|FE491698.1|FE491698
genomic: TGAAGTGGAACGAATCCGAGGCATCAGTTGGGCGAGTCTTAGCCGTCGAGgttcgtcctt ... tctataacagATTCTACGTGCCTTTGCCGAGGAAGGCGCTCACTCTGCCAGAGTTCAGGAG
EST: TGAAGTGGAACGAATCCGAGGCATCAGTTGGGCGAGTCTTAGCCGTCGAG ATTCTACGTGCCTTTGCCGAGGAAGGCGCTCACTCTGCCAGAGTTCAGGAGEST: gi|169024184|gb|FE433030.1|FE433030
genomic: TGAAGTGGAACGAATCCGAGGCATCAGTTGGGCGAGTCTTAGCCGTCGAGgttcgtcctt ... tctataacagATTCTACGTGCCTTTGCCGAGGAAGGCGCTCACTCTGCCAGAGTTCAGGAG
EST: TGAAGTGGAACGAGTCCGAGGCATCAGTTGGGCGAGTCTTAGCCGTCGAG ATTCTACGTGCCTTTGGCGAGGAAGGCGCTCACTCTGCCAGAGTTCAGGAGEST: gi|169049429|gb|FE458288.1|FE458288
genomic: TGAAGTGGAACGAATCCGAGGCATCAGTTGGGCGAGTCTTAGCCGTCGAGgttcgtcctt ... tctataacagATTCTACGTGCCTTTGCCGAGGAAGGCGCTCACTCTGCCAGAGTTCAGGAG
EST: TGAAGTGGAACGAGTCCGAGGCATCAGTTGGGCGAGTCTTAGCCGTCGAG ATTCTACGTGCCTTTGGCGAGGAAGGCGCTCACTCTGCCAGAGTTCAGGAGEST: gi|169054234|gb|FE463175.1|FE463175
genomic: TGAAGTGGAACGAATCCGAGGCATCAGTTGGGCGAGTCTTAGCCGTCGAGgttcgtcctt ... tctataacagATTCTACGTGCCTTTGCCGAGGAAGGCGCTCACTCTGCCAGAGTTCAGGAG
EST: TGAAGTGGAACGAGTCCGAGGCATCAGTTGGGCGAGTCTTAGCCGTCGAG ATTCTACGTGCCTTTGGCGAGGAAGGCGCTCACTCTGCCAGAGTTCAGGAG
genomic: TGAAGTGGAACGAATCCGAGGCATCAGTTGGGCGAGTCTTAGCCGTCGAGgttcgtcctt ... tctataacagATTCTACGTGCCTTTGCCGAGGAAGGCGCTCACTCTGCCAGAGTTCAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGATTGCTTGATTGGCGAGCCGGTGGCCGAAACGGTTTGTGCCAGCAAATGAAGTGGAACGAATCCGAGGCATCAGTTGGGCGAGTCTTAGCCGTCGAGgttcgtccttctctctattatgagttaacgccaagcgctctaacaaccctgctctataacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA