1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
AAAGCAACCGGGAAAACATTCCAACAACTTATCGAAGAAGCGTTTGTTACACCGCTGAAGGTTACTGGCGAGTTTTACGTCGGCATTCCTCCTGgtataatccagacattctctagtctatgacatgcgttataaaacaaacgtttcttactggcag
species | Selaginella moellendorffii |
transcript | EFJ33842 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: TGTTACACCGCTGAAGGTTACTGGCGAGTTTTACGTCGGCATTCCTCCTG GCGTGGAGGAGCGCCTCGCATCGCTCACTATGGATCCCGAGGAGCTCAAGAEST: gi|169107553|gb|FE511718.1|FE511718
genomic: TGTTACACCGCTGAAGGTTACTGGCGAGTTTTACGTCGGCATTCCTCCTGgtataatcca ... ttactggcagGCGTGGAGGAGCGCCTCGCATCGCTCACTATGGATCCCGAGGAGCTCAAGA
EST: TGTTACACCGCTGAATGTTACTGGCGAGTTTTACGTCGGCATTCCTCCTG GCGTGGAGGAGCGCCTCGCATCGCTCACTATGGATCCCGAGGAGCTCAAGAEST: gi|169099786|gb|FE500791.1|FE500791
genomic: TGTTACACCGCTGAAGGTTACTGGCGAGTTTTACGTCGGCATTCCTCCTGgtataatcca ... ttactggcagGCGTGGAGGAGCGCCTCGCATCGCTCACTATGGATCCCGAGGAGCTCAAGA
EST: TGTTACACCGCTGAAGGTTACTGGCGAGTTTTACGTCGGCATTCCTCCTG GCGTGGAGGAGCGCCTCGCATCGCTCACTATGGATCCCGAGGAGCTCAAGAEST: gi|169072954|gb|FE480809.1|FE480809
genomic: TGTTACACCGCTGAAGGTTACTGGCGAGTTTTACGTCGGCATTCCTCCTGgtataatcca ... ttactggcagGCGTGGAGGAGCGCCTCGCATCGCTCACTATGGATCCCGAGGAGCTCAAGA
EST: TGTTACACCGCTGAATGTTACTGGCGAGTTTTACGTCGGCATTCCTCCTG GCGTGGAGGAGCGCCTCGCATCGCTCACTATGGATCCCGAGGAGCTCAAGAEST: gi|169038685|gb|FE450156.1|FE450156
genomic: TGTTACACCGCTGAAGGTTACTGGCGAGTTTTACGTCGGCATTCCTCCTGgtataatcca ... ttactggcagGCGTGGAGGAGCGCCTCGCATCGCTCACTATGGATCCCGAGGAGCTCAAGA
EST: TGTTACACCGCTGAATGTTACTGGCGAGTTTTACGTCGGCATTCCTCCTG GCGTGGAGGAGCGCCTCGCATCGCTCACTATGGATCCCGAGGAGCTCAAGAEST: gi|169047424|gb|FE457492.1|FE457492
genomic: TGTTACACCGCTGAAGGTTACTGGCGAGTTTTACGTCGGCATTCCTCCTGgtataatcca ... ttactggcagGCGTGGAGGAGCGCCTCGCATCGCTCACTATGGATCCCGAGGAGCTCAAGA
EST: TGTTACACCGCTGAATGTTACTGGCGAGTTTTACGTCGGCATTCCTCCTG GCGTGGAGGAGCGCCTCGCATCGCTCACTATGGATCCCGAGGAGCTCAAGAEST: gi|169031178|gb|FE440383.1|FE440383
genomic: TGTTACACCGCTGAAGGTTACTGGCGAGTTTTACGTCGGCATTCCTCCTGgtataatcca ... ttactggcagGCGTGGAGGAGCGCCTCGCATCGCTCACTATGGATCCCGAGGAGCTCAAGA
EST: TGTTACACCGCTGAAGGTTACTGGCGAGTTTTACGTCGGCATTCCTCCTG GCGTGGAGGAGCGCCTCGCATCGCTCACTATGGATCCCGAGGAGCTCAAGAEST: gi|169112334|gb|FE512910.1|FE512910
genomic: TGTTACACCGCTGAAGGTTACTGGCGAGTTTTACGTCGGCATTCCTCCTGgtataatcca ... ttactggcagGCGTGGAGGAGCGCCTCGCATCGCTCACTATGGATCCCGAGGAGCTCAAGA
EST: TGTTACACCGCTGAAGGTTACTGGCGAGTTTTACGTCGGCATTCCTCCTG GCGTGGAGGAGCGCCTCGCATCGCTCACTATGGATCCCGAGGAGCTCAAGA
genomic: TGTTACACCGCTGAAGGTTACTGGCGAGTTTTACGTCGGCATTCCTCCTGgtataatcca ... ttactggcagGCGTGGAGGAGCGCCTCGCATCGCTCACTATGGATCCCGAGGAGCTCAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGCAACCGGGAAAACATTCCAACAACTTATCGAAGAAGCGTTTGTTACACCGCTGAAGGTTACTGGCGAGTTTTACGTCGGCATTCCTCCTGgtataatccagacattctctagtctatgacatgcgttataaaacaaacgtttcttactggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG