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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGATGGCAAGGCGGTAGTGTTCTCGCTTTGGAAACATTAAAGCGAGTGACGGCCGCGGGTAATCGTGCGCGTGATGCTCTAGTCGCCCAAGGATTGAAgtaagcttcttctttttttctttttcttttttcttctttttcgtcttgtgtttatgttaatgtctccattctacag

Basic information

species Selaginella moellendorffii
transcript EFJ24089
intron # 20
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169108777|gb|FE513046.1|FE513046
EST:     ACGGCCGCGGGTAATCGTGCGCGTGATGCTCTAGTCGCCCAAGGATTGAA                         GGTTGGACTCGTTGAGATCTTGCTAGGATTGCTTGATTGGCGAGCCGGTGG
genomic: ACGGCCGCGGGTAATCGTGCGCGTGATGCTCTAGTCGCCCAAGGATTGAAgtaagcttct ... cattctacagGGTTGGACTCGTTGAGATCTTGCTAGGATTGCTTGATTGGCGAGCCGGTGG
EST: gi|169053613|gb|FE462823.1|FE462823
EST:     ACGGCCGCGGGTAATCGTGCGCGTGATGCTCTAGTCGCCCAAGGATTGAA                         GGTTGGACTCGTTGAGATCTTGCTAGGATTGCTTGATTGGCGAGCCGGTGG
genomic: ACGGCCGCGGGTAATCGTGCGCGTGATGCTCTAGTCGCCCAAGGATTGAAgtaagcttct ... cattctacagGGTTGGACTCGTTGAGATCTTGCTAGGATTGCTTGATTGGCGAGCCGGTGG
EST: gi|169087285|gb|FE491698.1|FE491698
EST:     ACGGCCGCGGGTAATCGTGCGCGTGATGCTCTAGTCGCCCAAGGATTGAA                         GGTTGGACTCGTTGAGATCTTGCTAGGATTGCTTGATTGGCGAGCCGGTGG
genomic: ACGGCCGCGGGTAATCGTGCGCGTGATGCTCTAGTCGCCCAAGGATTGAAgtaagcttct ... cattctacagGGTTGGACTCGTTGAGATCTTGCTAGGATTGCTTGATTGGCGAGCCGGTGG
EST: gi|169024184|gb|FE433030.1|FE433030
EST:     ACGGCCGCGGGTAATCGTGCGCGTGATGCTCTAGTGGCCCAAGGATTGAA                         GGTTGGACTCGTGGAGATCTTGCTAGGATTGCTTGATTGGCGAGCCGGTGG
genomic: ACGGCCGCGGGTAATCGTGCGCGTGATGCTCTAGTCGCCCAAGGATTGAAgtaagcttct ... cattctacagGGTTGGACTCGTTGAGATCTTGCTAGGATTGCTTGATTGGCGAGCCGGTGG
EST: gi|169049429|gb|FE458288.1|FE458288
EST:     ACGGCCGCGGGTAATCGTGCGCGTGATGCTCTAGTGGCCCAAGGATTGAA                         GGTTGGACTCGTGGAGATCTTGCTAGGATTGCTTGATTGGCGAGCCGGTGG
genomic: ACGGCCGCGGGTAATCGTGCGCGTGATGCTCTAGTCGCCCAAGGATTGAAgtaagcttct ... cattctacagGGTTGGACTCGTTGAGATCTTGCTAGGATTGCTTGATTGGCGAGCCGGTGG
EST: gi|169054234|gb|FE463175.1|FE463175
EST:     ACGGCCGCGGGTAATCGTGCGCGTGATGCTCTAGTGGCCCAAGGATTGAA                         GGTTGGACTCGTGGAGATCTTGCTAGGATTGCTTGATTGGCGAGCCGGTGG
genomic: ACGGCCGCGGGTAATCGTGCGCGTGATGCTCTAGTCGCCCAAGGATTGAAgtaagcttct ... cattctacagGGTTGGACTCGTTGAGATCTTGCTAGGATTGCTTGATTGGCGAGCCGGTGG