1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
GCTGGTGTGATTGGTAAGAAGGGTGCCATGCATGCTTTGCATCCAAGCATCACACTGAAGGAATCTGGCGACATTTTGTCCTTGGAAGAAAAGTTTCAAGgtttgaacaattccacccaacaagttaattacgttttatttttgtttctttctttgcag
species | Selaginella moellendorffii |
transcript | EFJ09849 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: CACACTGAAGGAATCTGGCGACATTTTGTCCTTGGAAGAAAAGTTTCAAG GTGGTACTGGCGTCAATTTGACTCCACCACCTCCTCTCATTTGCAGEST: gi|169025605|gb|FE436518.1|FE436518
genomic: CACACTGAAGGAATCTGGCGACATTTTGTCCTTGGAAGAAAAGTTTCAAGgtttgaacaa ... ttctttgcagGTGGTACTGGCGTCAATTTGACTCCACCACCTCCTCTCATTTGCAG
EST: CACACTGAAGGAATCTGGCGACATTTTGTCCTTGGAAGAAAAGTTTCAAG GTGGTACTGGCGTCAATTTGACTCCACCACCTCCTCTCATTTGCAGEST: gi|169103866|gb|FE508363.1|FE508363
genomic: CACACTGAAGGAATCTGGCGACATTTTGTCCTTGGAAGAAAAGTTTCAAGgtttgaacaa ... ttctttgcagGTGGTACTGGCGTCAATTTGACTCCACCACCTCCTCTCATTTGCAG
EST: CACACTGAAGGAATCTGGCGACATTTTGTCCTTGGAAGAAAAGTTTCAAG GTGGTACTGGCGTCAATTTGACTCCACCACCTCCTCTCATTTGCAGEST: gi|169086949|gb|FE493052.1|FE493052
genomic: CACACTGAAGGAATCTGGCGACATTTTGTCCTTGGAAGAAAAGTTTCAAGgtttgaacaa ... ttctttgcagGTGGTACTGGCGTCAATTTGACTCCACCACCTCCTCTCATTTGCAG
EST: CACACTGAAGGAATCTGGCGACATTTTGTCCTTGGAAGAAAAGTTTCAAG GTGGTACTGGCGTCAATTTGACTCCACCACCTCCTCTCATTTGCAG
genomic: CACACTGAAGGAATCTGGCGACATTTTGTCCTTGGAAGAAAAGTTTCAAGgtttgaacaa ... ttctttgcagGTGGTACTGGCGTCAATTTGACTCCACCACCTCCTCTCATTTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGTGTGATTGGTAAGAAGGGTGCCATGCATGCTTTGCATCCAAGCATCACACTGAAGGAATCTGGCGACATTTTGTCCTTGGAAGAAAAGTTTCAAGgtttgaacaattccacccaacaagttaattacgttttatttttgtttctttctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA