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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtaggatagaagctccaaaagcttttctttggcgtttctgacgtaaagatcttccttgcctgtccag

Basic information

species Selaginella moellendorffii
transcript EFJ37532
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: LOC_Os04g53540.3 (Oryza sativa), 5'ss of exon 4
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtaggatag-------aagc-tccaaaagcttttctttggcgtttctgacgtaaagatcttccttgcctgtccag-------------------------
 || || || |||||||||||| ||||||||||||||||||| || ||||||||||  ||||| |||||||||||||||||    ||||| ||  | |||||   | |        || |  |||||   || |   |   | |  | |  |  |  | |   |  |||||                             
ACACCCAGATGATAAGCAGCGCAAGGAGCTGAGCCGGGAGCTCGGCCTGGAGCCTCTCCAAGTGAAGTTCTGGTTCCAGAACAAGCGCACCCAAATGAAGgtgaaaaaacctaattaatcacccaaatagttgttgattctgctcatcattttcacctttctttcacctgtgttcgtagcagtacaattcttttttttag

upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: LOC_Os02g45250.1 (Oryza sativa), 5'ss of exon 3
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtagg------atagaagctccaaaagcttttctttggcgtttctgacgtaaagatcttc---cttgcctgtccag--------------------------------------------------------------
 ||||| ||||| |||||||||   ||||| ||| ||  |||    || ||  | ||||| ||||||||||||||||||||||||||||||||| | ||||||             | |  |  |   | | | || |  ||  |  |     |   |||   |  |   ||   |                                                              
CCATCCGGACGAGAAGCAGCGCGCCGAGCTCAGCAGGAGGCTCTCCCTCGATGCGCGGCAGGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGATGAAGgtaaatcatccgcgagaacatcgcatcgtgtgccttagtcttcttctctcgtcggcgttcgagccggttcgtttcgtgcaatttcctgacacggtttcatgatccccccgcgcgcgccgcgatcttcgttttaccaag

upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: LOC_Os10g42490.1 (Oryza sativa), 5'ss of exon 4
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtaggatagaagctc----caaaagcttttctttggcgtttctg-acgtaaagatcttccttgcc---tgtccag-----------------------------
 ||||| ||||| |||||||| | | ||||||||| ||| || || ||  | ||||| || |||||||||||||||||||||||||| || ||| | ||||||  ||| |    |     || |  |     |   || | ||| |  |  | ||     | ||    ||| ||                              
GCATCCGGACGACAAGCAGCGGCTGAAGCTGAGCCAGGAACTGGGCCTCAAACCTCGCCAGGTCAAGTTCTGGTTCCAGAATCGCCGGACCCAGATGAAGgtactatatatatgcaaattaataattccatatatacgctactgtatttgcaaatgcaaatggcaatatgttcatgatgcattggctgggttgaatatgttcag

upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: LOC_Os06g10600.1 (Oryza sativa), 5'ss of exon 2
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtaggatagaag-----ctccaaaagcttttct---ttggcgtttctgacgtaaagatcttc--cttgcctgtccag-----------------------------------------------------------------
 || || ||||| || |||||   | |||| ||||||||||| ||  |||||||  ||||  ||||||||||||||||||||||||| || ||| | ||||||   || |||      ||| |  | ||||||   |||     ||   ||  | |   | |  | ||| ||                                                                      
CCACCCGGACGAGAACCAGCGGGCGCAGCTTAGCCGGGAGCTCGGGTTGGAGCCGAGGCAGATCAAGTTCTGGTTCCAGAATCGCCGGACCCAGATGAAGgtaaattacaaggagaattccgattggttttcttgattgatcgatcgatcgccatggattccggcgtgcgtgcttgcttccttccgttcgtttcttgcggggaggatgatgatatccatggtgtggggtttgctgtttgcag

upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: LOC_Os09g35760.1 (Oryza sativa), 5'ss of exon 3
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtag-gatagaagctccaaaagcttttctttggcgtttctgacgtaaagatcttccttgcctgtccag------------------------------------------
 ||||| ||||| ||||| ||   |||||| ||||||  |||    || |||   || || ||||||||||||||||||||||||||||| ||| | |||||   | | |  | | || |      ||  ||  | |  |    |     || |  | |  ||  ||                                           
ACATCCTGACGAGAAGCAACGGATGGAGCTCAGCCGGCGGCTCAACCTCGAGAGCCGCCAGGTCAAGTTCTGGTTCCAGAATCGCCGCACCCAGATGAAGgtttcgcttgctgttgcacagatcaatccatgatgatgtttg-attcttctcgtgttcgtttgatcatgattttgaatttttttttggttcgatttgtggtggtggcgag

upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: LOC_Os09g35760.2 (Oryza sativa), 5'ss of exon 3
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtag-gatagaagctccaaaagcttttctttggcgtttctgacgtaaagatcttccttgcctgtccag---------------------------------------------
 ||||| ||||| ||||| ||   |||||| ||||||  |||    || |||   || || ||||||||||||||||||||||||||||| ||| | |||||   | | |  | | || |      ||  ||  | |  |    |     || |  | |  ||  ||                                              
ACATCCTGACGAGAAGCAACGGATGGAGCTCAGCCGGCGGCTCAACCTCGAGAGCCGCCAGGTCAAGTTCTGGTTCCAGAATCGCCGCACCCAGATGAAGgtttcgcttgctgttgcacagatcaatccatgatgatgtttg-attcttctcgtgttcgtttgatcatgattttgaatttttttttggttcgatttgtggtggtggcgagcag

upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: LOC_Os04g48070.1 (Oryza sativa), 5'ss of exon 3
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtagg------atagaagctccaaa--agcttttctttggcgtttctgacgtaaagatcttccttgc-ctgtccag-----------------------------------------
 || || ||||| |||||||||   |||||||||  |  ||| || || || || ||||| ||||||||||||||||||||||| || |||||| | |||||| |      | |  | |  ||||  | |||| |  |    |   ||  | |  |   ||| |  | ||||                                             
CCACCCAGACGAGAAGCAGCGCGCCGAGCTGAGCAAGCGGCTCGGCCTCGAACCCCGGCAGGTCAAGTTCTGGTTCCAGAATCGGCGAACGCAGATGAAGgtaagcgatcgaaacgaacagcaaaccatctttgcactccgatcgatggtgcagtgcagttcttgacactgtgtgtgtgtgtgtctctctctccctgtggtgattgaattggcaaag

upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: LOC_Os08g04190.1 (Oryza sativa), 5'ss of exon 1
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtaggatagaagctccaaaagcttttctttggcgtttctgacgtaaagatcttccttgcctgtccag-------------------------------------------------------
 || || || || ||||||||| ||||||| ||||| ||||| || || ||||| |  || ||||||||||||||||||||    ||||| ||| | ||||||  |||  |   |    | |  |  | |  | |    | | |    |  | | | |  |    |                                                        
CCACCCTGATGACAAGCAGCGCAAGGAGCTCAGCCGCGAGCTCGGCCTCGAGCCCCTCCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACCCAGATGAAGgtaatatactaatccgtgcatccatcgtatatcttacacgtcatgtgaacgtgcatcggttcataatgttgtgtttataaatgttaatggtatgtgtggttgcacgggtttgtatgttgcag

upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: LOC_Os08g08820.1 (Oryza sativa), 5'ss of exon 4
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtagg-atagaagctccaaaagcttttctttggcgtttctgacgtaaagatcttccttgcct--gtccag------------------------------
 || || ||||| ||||||||| ||||||||||| ||||||| || || || |||| ||| || || |||||||| |||||    ||||| ||| | |||| | | ||| || ||||  |    | | |   | |||  |    ||   |  ||  | || |  | | |                               
GCACCCAGACGACAAGCAGCGCAAGGAGCTGAGCAGGGAGCTGGGTCTTGAACCTCTGCAGGTTAAATTCTGGTTTCAGAACAAGCGCACACAGATGAAGgcaagtataaaaactccttatagatatatagagtgttctttggttatttaatttgatggcttcagactaaaatgattgggaattactgaaaaataaaatt

upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G122897_T01 (Zea mays), 5'ss of exon 2
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtag-gatagaagctccaaaagcttttctttggcgtttctgacgtaaagatcttccttgcctgtccag--------------------------------
 || || ||||| ||||||||| ||||||||||||||||||| || |||||||| |  || ||||||||||||||||||||    ||||||||  | |||||   |||     ||  || |   |        | |        |     | |||  ||| | || |                                 
GCACCCGGACGACAAGCAGCGCAAGGAGCTGAGCCGGGAGCTGGGGCTGGAGCCCCTCCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACGCAAATGAAGgtgccgatcctgcctataataatctcagccccccctgatccttttttttttgttctgtgcatttcgatcgatcgggaaaattttggtttcggggttgcat

upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G004957_T02 (Zea mays), 5'ss of exon 2
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtaggatagaagctccaaaagcttttctttggcgtttctgacgtaaagatcttccttgcctgtccag-----------------------------------------------------------------
 || || ||||| |||||| |  ||||||||||||||||||| || ||||||||||  || ||||||||||||||||||||    || || ||| | ||||||   ||    ||  |    ||  |   || | |  |  ||     || |  | |  ||||                                                                      
GCACCCTGACGACAAGCAGAGGAAGGAGCTGAGCCGGGAGCTGGGCCTGGAGCCTCTCCAGGTCAAGTTCTGGTTCCAGAACAAGCGTACCCAGATGAAGgtactgtactgact--agtgactactgactgacatcacccaccggccgaacaccatcacctgcttgcaatgcaatgcaagcatattcagggtgtgctgctgatggactggagcacgcgcgcatgcattgcag

upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G145690_T02 (Zea mays), 5'ss of exon 2
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtaggatagaagc----tccaaaagct----tttctttggcgtttctgacgtaaagatcttccttgcc--tgtccag---------------------------------------------------------------------------------------------
 || || ||||| || |||||   | |||||||| ||||||| || |||||||| |||||  ||||||||||||||||||| ||||| |||||| | ||||||   || |  |    |||    |||    |   | |  |||||||    | |  |||| | |||    |||||                                                                                               
GCACCCGGACGAGAACCAGCGGATGCAGCTGAGCAGGGAGCTGGGGCTGGAGCCCCGGCAGATCAAGTTCTGGTTCCAGAACCGCCGGACGCAGATGAAGgtacagtaaacccgtcgtcccgtggctggcatccttctcacgtttct----tcattatctccgttggtgttgtccttcattggattattcgtgctcctgtttgaatgaccgccattaactttggtgtcgattgtttgtttggccgctggatggggggcgtactactgcag

upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G126646_T01 (Zea mays), 5'ss of exon 2
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtagg--atagaagctccaaaagcttttctttggcgtttctgacgtaaagatcttccttgcctgtccag---------------------------------------------------------------------------------------------------------------------
 || || ||||| || |||||   | |||||||| ||||||| || |||||||| |||||  ||||||||||||||||||| ||||| |||||| | |||||  |   |  ||   |     ||  ||||||  | ||     |    ||   | |||||   ||   |                                                                                                                     
GCACCCGGACGAGAACCAGCGGATGCAGCTGAGCAGGGAGCTGGGGCTGGAGCCCCGGCAGATCAAGTTCTGGTTCCAGAACCGCCGGACGCAGATGAAGgtgtgtagtttaactgcaccttgccattcttttaccttctctcctctcagtcgtcccttggtggtgtggtgttggtcctctgtttggttcgcgcccgatcctgttcgagatgacggccattaacttgggtgtcggttgtttgtttgttaatttggccgctggacggggtgtgtacgtactgcgcag

upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G118063_T03 (Zea mays), 5'ss of exon 4
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtaggatagaagctccaaaagcttttctttggcgtttctgacgtaaagatcttccttgcctgtccag-------------------------------------------------------------------------
 || || || || ||||||||  ||||||||||||||||||| || || ||||| | ||| ||||||||||||||||||||    ||||| ||| | |||| | | |  ||    | |   || | || || | |   | || ||      | ||  || |    ||                                                                         
ACACCCGGATGACAAGCAGCGAAAGGAGCTGAGCCGGGAGCTCGGTCTCGAGCCGCTGCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACACAGATGAAGgcaagctctaatacacca---ctgtgctgtg-catccat-acatagtaccatgccacgcatagaaagagggatcatatatatacgcatagtctcgctgacaatgcaaacgtgattatattatatatatgggcgtatgcag

upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: AC235534.1_FGT007 (Zea mays), 5'ss of exon 3
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtaggatagaagctccaaaagcttttctttggcgtttctgacgtaaagatcttccttgcctgtccag
 || || ||||| |||||||||  | |||||||| || |||| || ||||| || ||||| |||||||||||||||||||| || ||||||||  | |||||  |  |   |   ||||  |   ||||||  ||     |      | || | |      || |||
CCACCCGGACGAGAAGCAGCGCGCGCAGCTGAGCAGGCAGCTGGGCCTGGACCCGCGGCAGGTCAAGTTCTGGTTCCAGAACCGGCGCACGCATTTGAAGgtgagcgaccggg--caaacccagctctttgaggtgcgccatt---ggttcgtgccgtttggtgcag

upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G130442_T02 (Zea mays), 5'ss of exon 3
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtaggatagaagctccaaaagcttttctttggcgtttctgacgtaaagatcttccttgcctgtccag-------------------
 || || ||||| ||||||||  ||||||||||||||||||| || || ||||| | ||| |||||||| |||||||||||    ||||| ||| | |||| | |  ||     |   |  |    | ||   | ||| |      |  |      ||    | ||                    
GCACCCGGACGACAAGCAGCGGAAGGAGCTGAGCCGGGAGCTCGGCCTCGAGCCGCTGCAGGTCAAGTTTTGGTTCCAGAACAAGCGCACACAGATGAAGgcaagcaagctctactgcacacacaccgttcctgattccgtgacgtacgttgctgctgataatgcaaaccaacgtgattactgcag

upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G062318_T01 (Zea mays), 5'ss of exon 2
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtag--gatagaagctccaaaagcttt---tctttggcgtttctgacgta-aagatcttccttgcctgtccag----------------------------------------------------------------
 || |||||||| || ||||||   | ||| ||||||||||| || |||||||| || ||  ||||||||||||||||||| |||||||| ||| | ||||||          |  |||   |||||   |||||     || | |   |  || ||  | |      |   |                                                                
GCACCCCGACGAGAACCAGCGCGCCGCGCTCAGCCGGGAGCTCGGCCTGGAGCCGCGCCAGATCAAGTTCTGGTTCCAGAACCGCCGCACCCAGATGAAGgtacccaccgagtgtcccagccgctttgattcttttcttcttttcattcacgaggtcgccgtgtttcatttcgaccttctgtcggcttgttttccacgggttcctgatggatgacggcggccttgtgcgagctgcag

upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G026643_T01 (Zea mays), 5'ss of exon 3
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtaggatagaagctccaaaagcttttctttggcgtttctgacgtaaagatcttccttgcctgtccag------------------------------------------------------
||| || ||||| |||||||||   ||||| |||  |  ||| || || || || || || |||||||||||||||||||| |||||||||||| | |||||| |      |   |  || |      | | |||           |  | || |||  || |||                                                        
TCACCCGGACGAGAAGCAGCGCGGCGAGCTCAGCAAGAGGCTCGGCCTCGACCCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgtaagcggacgga--cggaatcaccgtctcgtcgtcgacagaccgtatttttttcttctctttcccccccgccccgatttcagttccaggttcctgacacgcggtgattccacttgccaag

upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G001289_T01 (Zea mays), 5'ss of exon 3
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgt-aggatagaagct--ccaaaagcttttctttggcgtttctgacgtaaag--atcttccttgcctgtccag----------------------------
 || || ||||| ||||||||| |||||||||| |||||||| || ||||  || |  || ||||||||||||||||||||    ||||||||  | ||||| | |||     ||   |     || ||||| |   |      |||  ||   | |  ||   ||   | |                            
GCACCCGGACGACAAGCAGCGCAAGGAGCTGAGTCGGGAGCTGGGTCTGGTACCCCTCCAGGTCAAGTTCTGGTTCCAGAACAAGCGCACGCAAATGAAGgtgacgatcctgactaatctcgccctgttcttcgctctcctgtgcgttcagttgtgtgactaatctcaactgcaaaggcagacgcgtcgtcgcaactact

upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G116658_T01 (Zea mays), 5'ss of exon 3
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtagga-------tagaagctccaaaagcttttctttggcgtttctgacgtaaagatcttccttgcctgtccag---------------------------------------
 || |||||||| |||||  |   |||||| |||  |  |||    || |||   || || |||||||||||||||||||| |||||||||||| | |||||  |        | | ||| | ||          |   |    |    ||   |    | | | | |||                                           
CCACCCCGACGAGAAGCAAAGGATGGAGCTCAGCAAGCGGCTCAACCTAGAGAGCCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGgttcggacttaattgggagcgcgaaccagccacagtcaaccagacatgtgtcgggcggctgcgtacgtgtgtgatgacaattttatgtgtttgcatctcgtcgtgatgagcag

upper sequence: EFJ37532 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G004334_T01 (Zea mays), 5'ss of exon 1
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtaggatagaagctccaaaagcttttctttggcgtttctgacgtaaagatcttccttgcctgtccag----------------------------------------------------------------------------------------------
 || |||||||| || ||||||   | ||| ||||||||||| || |||||||| || ||  ||||||||||||| ||||| |||||||| ||| | ||||||  |||       ||  ||  |  |  |  | ||  |    |     | |   |  |  |  |                                                                                                
GCACCCCGACGAGAACCAGCGCGCCGCGCTCAGCCGGGAGCTCGGCCTGGAGCCGCGCCAGATCAAGTTCTGGTTTCAGAACCGCCGCACCCAGATGAAGgtatcatactgagcacagcagtgtcccggttcctttgattttcttttagtttctttcacgaggtcgccgtgctgttgcatttcgacattctgttctgtcggcttgttttccacgggttcttgatggatgacgacgctcctgtgtgcctgtgcgagctgcag

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 22

TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtaggataga ... gcctgtccagGCCCAGCAGGAGCGAGCGGAGAACAACGTTTTGCGCCACGAGGTGGAGAAGCTCCGCGCTGAAAACATCACCATGCGCGAGGCGATACGCAATGCATCGT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAATCGCCGCACGCAGCTCAAGgtaggatagaagctccaaaagcttttctttggcgtttctgacgtaaagatcttccttgcctgtccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA