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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTACCGATGCTTACACTCCAGATGTGAGCATTGATCTCAAAAAGCACCACACTCCACTGTCGTTCGTGGACAAGTTCGCCTACTGGACCgtgaaagcgatgcgtttgcccacagacattttcttccaggcaagatatctttctctctttctatcctttgaatatgaatgagcatgtttatgttgaatccttgcgaagctcctggggatcaaacgagtttttagtttgctag

Basic information

species Selaginella moellendorffii
transcript EFJ35306
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ35306 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: LOC_Os02g47200.1 (Oryza sativa), 5'ss of exon 2
CCTACCGATGCTTACACTCCAGATGTGAGCATTGATCTCAAAAAGCACCACACTCCACTGTCGTTCGTGGACAAGTTCGCCTACTGGACCgtgaaagcgatgcgtttgcccacagacattttcttccaggcaagatatctttctctctttctatcctttgaatatgaatgagcatgtttatgttgaatccttgcgaagctcctggggatcaaacgagtttttagtttgctag
                              || || || || |||||||||   ||   |  | |  | |||||| |||||||||||||||| || ||| ||||  ||||||| ||||| |||||||||| ||   | |        |||   ||| |  || || |    ||   | ||| |||   |    ||||     |||| |||||  ||    ||   ||||   
-----------------------------GATCGACCTGAAGAAGCACCACGAGCCGAAGGTGCTGCTCGACAAGGTCGCCTACTGGACCGTCAAGGCGCTGCGCGTGCCCACTGACATCTTCTTCCAGgtaaccaaccacaactaattt---tccatcaaagatcat---gccaatctattttg---ctgatcgaaatggatgggaatcaatggaacgatt---ttgcag-