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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGATTCGTCGTGCCTTGCGATTTTACTCCACGATTCAAGCCGAGGACGGCCACTGGCCTGGTGATTACGGAGGTCCCATGTTTCTCATGCCGGGATTGgtatgggcttatctttgggatttcttacatgccaaatgatggtgtattatcag

Basic information

species Selaginella moellendorffii
transcript EFJ34967
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ34967 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GLYMA01G00430.1 (Glycine max), 5'ss of exon 3
CACGATTCGTCGTGCCTTGCGATTTTACTCCACGATTCAAGCCGAGGACGGCCACTGGCCTGGTGATTACGGAGGTCCCATGTTTCTCATGCCGGGATTGgtatgggcttatctttgggatttcttacatgccaaatgatggtgtattatcag--------------------------------------------------------
 ||  |  |  | ||| |  | ||  | || ||  | ||   | | ||||| |||||||| || ||||| ||||||||||||||||| ||||| || ||||||  |   | | ||    | ||| |          |  | |  | || ||                                                          
AACATTAAGAAGGGCCGTAAGTTTCCATTCAACTCTCCAGTGCCATGACGGACACTGGCCGGGAGATTATGGAGGTCCCATGTTTCTGATGCCTGGCTTGgta-agttatgttttcaacacttcatttggtttggtttttagatttttgtcttccatccccattgataaccatgaaacccctaaactatctgctgtatgcaattaacag

upper sequence: EFJ34967 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: PP1S33_211V6.1 (Physcomitrella patens), 5'ss of exon 2
CACGATTCGTCGTGCCTTGCGATTTTACTCCACGATTCAAGCCGAGGACGGCCACTGGCCTGGTGATTACGGAGGTCCCATGTTTCTCATGCCGGGATTGgtatgggcttatctttgggatttcttacatgccaaatgatggtgtattatcag------------------------------------------------
|||  |||||||  || |||| |||||||| ||  | |||||  | || || |||||||| ||||| ||||| ||||||||||| |||||||| ||| |||||     ||    ||   ||||    |||  |   ||    | | | | ||                                                 
CACTCTTCGTCGATCCATGCGCTTTTACTCGACCCTACAAGCTCACGATGGACACTGGCCGGGTGACTACGGGGGTCCCATGTTCCTCATGCCTGGACTGgtaatcatttcatcttcacatttacc-catttcgtctgccactttttaaacaaagcattcaataacttcattggttttgcttgttgtaactatgataccct