Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATGGAGGCCGTCAAGGTCCGGGTCCAAACCAAGCCCGGATTCGCTAATGGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGGgtatgttcttgtcctttttcttctctgttcctttttaacactagctatttctgtgctcag

Basic information

species Selaginella moellendorffii
transcript EFJ34707
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169040865|gb|FE447916.1|FE447916
EST:     GGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGG                         ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT
genomic: GGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGGgtatgttctt ... ctgtgctcagACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT
EST: gi|169099696|gb|FE503093.1|FE503093
EST:     GGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGG                         ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT
genomic: GGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGGgtatgttctt ... ctgtgctcagACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT
EST: gi|169045763|gb|FE451190.1|FE451190
EST:     TCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGG                         ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT
genomic: TCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGGgtatgttctt ... ctgtgctcagACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT
EST: gi|169115022|gb|FE516387.1|FE516387
EST:     GGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGG                         ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT
genomic: GGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGGgtatgttctt ... ctgtgctcagACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT
EST: gi|169035004|gb|FE444852.1|FE444852
EST:     GGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGG                         ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT
genomic: GGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGGgtatgttctt ... ctgtgctcagACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT
EST: gi|169037747|gb|FE442458.1|FE442458
EST:     GGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGG                         ACTTTACAGAGGACTGGTGCCTCTCTGGGGA
genomic: GGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGGgtatgttctt ... ctgtgctcagACTTTACAGAGGACTGGTGCCTCTCTGGGGA
EST: gi|169040864|gb|FE447915.1|FE447915
EST:     GGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGG                         ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT
genomic: GGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGGgtatgttctt ... ctgtgctcagACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT
EST: gi|169102685|gb|FE508079.1|FE508079
EST:     GGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGG                         ACTTTACAGAGGACTGGTGCCTCTCTGGNGACGCCAAATTCCAT
genomic: GGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGGgtatgttctt ... ctgtgctcagACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT
EST: gi|169050328|gb|FE457550.1|FE457550
EST:     GGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGG                         ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT
genomic: GGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGGgtatgttctt ... ctgtgctcagACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT
EST: gi|169099376|gb|FE500992.1|FE500992
EST:     GGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGG                         ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT
genomic: GGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGGgtatgttctt ... ctgtgctcagACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT
EST: gi|169035005|gb|FE444853.1|FE444853
EST:     GGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGG                         ACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT
genomic: GGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGGgtatgttctt ... ctgtgctcagACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 34

CGATGGAGGCCGTCAAGGTCCGGGTCCAAACCAAGCCCGGATTCGCTAATGGGCTTCTCGATGGCCTGCCAAAAATCACGAGGGCTGAGGGCGTTCCTGGgtatgttctt ... ctgtgctcagACTTTACAGAGGACTGGTGCCTCTCTGGGGACGCCAAATTCCAT




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