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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTCTGGATGTCCAGGCTTGCTGGAGATGGATTTGGAGCAACGCATGCAATGATCCGGCACCATGGGTGGTGTCGGGAGTGCATGTCCAATGCTTCATGgtatgctcactttcttcttttgaatttctttttctgtcccaaactttgtgacgatctttgtggatctttgtag

Basic information

species Selaginella moellendorffii
transcript EFJ33295
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ33295 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: PP1S3_298V6.1 (Physcomitrella patens), 5'ss of exon 2
ACGTCTGGATGTCCAGGCTTGCTGGAGATGGATTTGGAGCAACGCATGCAATGATCCG---GCACC--ATGGGTGGTGTCGG--GAGTGCATGTCCAATGCTTCATGgtatgct-cactttcttcttttgaatttctttttctgtcccaaactttgtgacgat----ctttgtggatctttgtag----------------------------------
                  ||||||||||||| ||||||||||||| |||||||    |   | | |  ||  | |  ||| |  |  |||| |||||  | |     |||| || |    |   |      |       |      |   |   | || | ||    ||| ||||    ||  |                                   
------------------TTGCTGGAGATGGTTTTGGAGCAACGCGTGCAATGTCTTGCAGGAATCTAATTTGGGTCGTCAGCCGGATGCAAGTCCA-CGTTGAGCAGTATCCTGCGTGgtacgcaacgagacagacgatctccctctttatgctatgccaatttgacttcgtggcctattaaatactcatatttcgtaaaatcgtcaataggatccga