1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GACCTCGGATCATCTGAGTGACAAGGAGTTTCGCCGTCTAAGTTTCGATATGATGCTCGCGTGGGAAGCTCCCGGAGCTGCGAATAAGCCCACTGTTAAGgtgagtgttgtctccagcagctacacgtaagcatagagagcatctagatcatgaaactggaccagaaggatcaagcattgcgatagcttcgcatcaggta...
species | Selaginella moellendorffii |
transcript | EFJ32436 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGATGCTCGCGTGGGAAGCTCCCGGAGCTGCGAATAAGCCCACTGTTAAG AAGGATAAGGAACAAGGAATCATGGCTGGCGACAAGGATGAGGAAGACTCGEST: gi|169020250|gb|FE428273.1|FE428273
genomic: TGATGCTCGCGTGGGAAGCTCCCGGAGCTGCGAATAAGCCCACTGTTAAGgtgagtgttg ... ccaatggcagAAGGATAAGGAACAAGGAATCATGGCTGGCGACAAGGATGAGGAAGACTCG
EST: CTCCCGGAGCTGCGAATAAGCCCACTGTTAAG AAGGATAAGGAACAAGGAATCATGGCTGGCGACAAGGATGAGGAAGACTCG
genomic: CTCCCGGAGCTGCGAATAAGCCCACTGTTAAGgtgagtgttg ... ccaatggcagAAGGATAAGGAACAAGGAATCATGGCTGGCGACAAGGATGAGGAAGACTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCTCGGATCATCTGAGTGACAAGGAGTTTCGCCGTCTAAGTTTCGATATGATGCTCGCGTGGGAAGCTCCCGGAGCTGCGAATAAGCCCACTGTTAAGgtgagtgttgtctccagcagctacacgtaagcatagagagcatctagatcatgaaactggaccagaaggatcaagcattgcgatagcttcgcatcaggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaagga