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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTACATTGGAAGGTGGTGACAAGATTGTGGATTGTCCTCCCACTTTGACAATGTATGCGTTTGATGCCGCTgtaagcgtcatcttgtttgtgattcaattttctttggtctgttctttactaaagcttctatagttccgaggtttcatgacttccgcatctatgttcctggtatcgtgcag

Basic information

species Selaginella moellendorffii
transcript EFJ31554
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ31554 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: AT5G10330.1 (Arabidopsis thaliana), 5'ss of exon 5
TTGTACATTGGAAGGTGGTGACAAGATTGTGGATTGTCCTCCCACTTTGACAATGTATGCGTTTGATGCCGCTgtaa---------gcgtcatcttgtttgtga----ttcaattttc-tttggtctgttctttactaaa--gcttctatagttc---cgaggtttcatgacttccgcatctatgttcctggt-atcgtgcag
 ||    || ||   ||| || |||||| | ||||||||||| |||||  ||||||||| ||||||||| ||||| |         | |||||      ||  |    | | |||||| | || |   |||| | | |    |||||| |   ||   |    | |   | |||   ||| |  ||   || |  |    |||
ATGCGTGTTAGATCCTGGGGAGAAGATTATAGATTGTCCTCCAACTTTCTCAATGTATGTGTTTGATGCGGCTGTGAATGGAGCAGGTGTCATTAAAGgtgaaagatttacgattttcatgtgtttcattctcttcgattttgcttctctctctctctctgaatgtatagtcttaaacatgttggtctttgtttgtttcacag

upper sequence: EFJ31554 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: Vv18s0072g00940.t01 (Vitis vinifera), 5'ss of exon 5
TTGTACATTGGAAGGTGGTGACAAGATTGTGGATTGTCCTCCCACTTTGACAATGTATGCGTTTGATGCCGCTgtaagcgtcat-cttgttt---gtgattcaattttctttggtctgttctt--tactaaagcttctatagttccgaggtttcatgacttccgcatctatgttcctggtatcgtgcag---------
 |||  | ||||   |||||||||||||||||||||||| || ||||| ||||||||||  |||||||| ||||| |  |     ||||||      | |  | ||| |  |    || | |   || || |  |  |    ||  || | ||  |   ||  |   |    |       || ||             
ATGTGTACTGGATCCTGGTGACAAGATTGTGGATTGTCCGCCAACTTTCACAATGTATGAATTTGATGCTGCTGTTAATGGGGCACTTGTTCTCAAAGgtaaagtttacactttcttgctttaaatattataattctttctattttgaagatttctactttatggtccctcttcttaaacatggtttcctaacctgtt