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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGATTGCGTTACTTGCACGAAGAATGCCGTGTTGGTTGCATCGTCCACAGGGACATGCGTCCAAACAATATTCTTCTGACACACGACTTTGAGCCCATGgttagtgctttgtctacgtttgcgtgtctgccgtcgtgcgttacgtttatctgatacgtgagattaaacag

Basic information

species Selaginella moellendorffii
transcript EFJ30369
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ30369 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: PP1S336_36V6.1 (Physcomitrella patens), 5'ss of exon 6
GGGATTGCGTTACTTGCACGAAGAATGCCGTGTTGGTTGCATCGTCCACAGGGACATGCGTCCAAACAATATTCTTCTGACACACGACTTTGAGCCCATGgt-----------tagtgctttgtctacgtttgcgt-gtctgccgtcgtgcgttacgtttatctgatacgtgagattaaacag---------------------------------
 || ||  | || ||||| || || || || |||||||| || || ||||| ||| ||||||| ||||||||||| || || ||||||||||| || |||||            ||   ||  | |   ||   || ||      || | |        |  | ||| | |    || |  ||                                 
AGGTTTAAGATATTTGCATGAGGATTGTCGGGTTGGTTGTATTGTGCACAGAGACTTGCGTCCCAACAATATTCTGCTTACCCACGACTTTGAACCTATGgtatgcatcgtagcagaaattcttttcaattcaagtagttccatttcctactcctaagctggcagattcttacacttgagtagtcattgagagaagttttgttctttggatatcag

upper sequence: EFJ30369 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: PP1S59_359V6.1 (Physcomitrella patens), 5'ss of exon 5
GGGATTGCGTTACTTGCACGAAGAATGCCGTGTTGGTTGCATCGTCCACAGGGACATGCGTCCAAACAATATTCTTCTGACACACGACTTTGAGCCCATGgttagtgctttgtctacgtttgcgtgtctgccgtcgtgcgttac-gtttatctgatacgtgagattaaacag----------------------------------------------
 |||||| | || ||||| || || || || ||||| ||||| || ||||| ||| ||||||| ||||||||||| || || ||||||||||| || |||||  |||   | || ||      || ||   ||      ||| | ||||||    |   ||     |  |                                                
AGGATTGAGATATTTGCATGAGGATTGTCGGGTTGGATGCATAGTGCACAGAGACTTGCGTCCCAACAATATTCTGCTTACTCACGACTTTGAACCTATGgtatgtggcgt-tccacacac-tgtttcgaacggtaaatgtttctgtttattgtctgaatggccacatgcctattcctaatgtggttaccgacagcacaagtgttttttggatatcag