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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTCCGATGCTTACACTCCAGATGTGAGCATTGATCTCAAAAAGCACCACACTCCACTGTCGTTCGTGGACAAGTTCGCCTACTGGACCgtgaaagcgatgcgtttgcccacagacattttcttccaggcaagatatctttctttctttctttctatcttttgaatatgaatgagcatgtttatgttgaatccttgcgaagttcctggggatcaaacgagtttttagtttgctagtcttataaacttggactgattttatttttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ27318
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ27318 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: LOC_Os02g47200.1 (Oryza sativa), 5'ss of exon 2
CCTTCCGATGCTTACACTCCAGATGTGAGCATTGATCTCAAAAAGCACCACACTCCACTGTCGTTCGTGGACAAGTTCGCCTACTGGACCgtgaaagcgatgcgtttgcccacagacattttcttccaggcaagatatctttctttctttctttctatcttttgaatatgaatgagcatgtttatgttgaatccttgcgaagttcctggggatcaaacgagtttttagtttgctagtcttataaacttggactgattttatttttgcag
                              || || || || |||||||||   ||   |  | |  | |||||| |||||||||||||||| || ||| ||||  ||||||| ||||| |||||||||| ||   | |     |  |||       ||  |  || || |    ||   | ||| |||   |    |||| |   |||| |||||  ||    ||   ||||                                    
-----------------------------GATCGACCTGAAGAAGCACCACGAGCCGAAGGTGCTGCTCGACAAGGTCGCCTACTGGACCGTCAAGGCGCTGCGCGTGCCCACTGACATCTTCTTCCAGgtaaccaaccacaactaattt-------tccatcaaagatcat---gccaatctattttg---ctgatcgaaatggatgggaatcaatggaacgatt---ttgcag----------------------------------