1 5' 3' | 2 5' 3' | 3 5' 3' |
GTTCCAGAGGGGTTTGAAGAGGAAGCCGATGGCGCTCATCAAGAAGCTCCGCAAGGCGgtaagttcatcgatcttttctttgtttctcttttcttattgattccttgtgtcttgcgtag
species | Selaginella moellendorffii |
transcript | EFJ26636 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGGGTTTGAAGAGGAAGCCGATGGCGCTCATCAAGAAGCTCCGCAAGGCG AAACGTGAGGCCCCGGCTGGTGAGAAGCCCGAGCCAGTGCGAACGCATCTCEST: gi|169027972|gb|FE435889.1|FE435889
genomic: GGGGTTTGAAGAGGAAGCCGATGGCGCTCATCAAGAAGCTCCGCAAGGCGgtaagttcat ... tcttgcgtagAAACGTGAGGCCCCGGCTGGTGAGAAGCCCGAGCCAGTGCGAACGCATCTC
EST: GGGGTTTGAAGAGGAAGCCGATGGCGCTCATCAAGAAGCTCCGCAAGGCG AAACGTGAGGCCCCGGCTGGTGAGAAGCCCGAGCCAGTGCGAACGCATCTCEST: gi|169074868|gb|FE482749.1|FE482749
genomic: GGGGTTTGAAGAGGAAGCCGATGGCGCTCATCAAGAAGCTCCGCAAGGCGgtaagttcat ... tcttgcgtagAAACGTGAGGCCCCGGCTGGTGAGAAGCCCGAGCCAGTGCGAACGCATCTC
EST: GGGGTTTGAAGAGGAAGCCGATGGCGCTCATCAAGAAGCTCCGCAAGGCG AAACGTGAGGCCCCGGCTGGTGAGAAGCCCGAGCCAGTGCGAACGCATCTC
genomic: GGGGTTTGAAGAGGAAGCCGATGGCGCTCATCAAGAAGCTCCGCAAGGCGgtaagttcat ... tcttgcgtagAAACGTGAGGCCCCGGCTGGTGAGAAGCCCGAGCCAGTGCGAACGCATCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCAGAGGGGTTTGAAGAGGAAGCCGATGGCGCTCATCAAGAAGCTCCGCAAGGCGgtaagttcatcgatcttttctttgtttctcttttcttattgattccttgtgtcttgcgtag
- - - - - - TTGAAG
- - - - - - - TGAAGA
- - - - - - - - AAGAGG
- - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - AGAAGC