1 5' 3' | 2 5' 3' | 3 5' 3' |
TCTCGCACCTTTCAACGAGCCAGTCGAGGGATGGTGGAATATCAACCGCAGCAAAGCAGCGCAAGAGGGATGTAACTTTCGGTTCTCGTCCATGCGCCAGgtaaatctccgcttaattaaccagctgaaccaagacggagaaagaattgcgcag
species | Selaginella moellendorffii |
transcript | EFJ26147 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCAAAGCAGCGCAAGAGGGATGTAACTTTCGGTTCTCGTCCATGCGCCAG GTCGTTTTGGATGTGAAACGAGCTCTTCTCGACAAGGGCCTGTCCACGAAGEST: gi|169066673|gb|FE473284.1|FE473284
genomic: GCAAAGCAGCGCAAGAGGGATGTAACTTTCGGTTCTCGTCCATGCGCCAGgtaaatctcc ... aattgcgcagGTCGTTTTGGATGTGAAACGAGCTCTTCTCGACAAGGGCCTGTCCACGAAG
EST: GCAAAGCAGCGCAAGAGGGATGTAACTTTCGGTTCTCGTCCATGCGCCAG GTCGTTTTGGATGTGAAACGAGCTCTTCTCGACAAGGGCCTGTCCACGAAGEST: gi|169111976|gb|FE512227.1|FE512227
genomic: GCAAAGCAGCGCAAGAGGGATGTAACTTTCGGTTCTCGTCCATGCGCCAGgtaaatctcc ... aattgcgcagGTCGTTTTGGATGTGAAACGAGCTCTTCTCGACAAGGGCCTGTCCACGAAG
EST: GCAAAGCAGCGCAAGAGGGATGTAACTTTCGGTTCTCGTCCATGCGCCAG GTCGTTTTGGATGTGAAACGAGCTCTTCTCGACAAGGGCCTGTCCACGAAG
genomic: GCAAAGCAGCGCAAGAGGGATGTAACTTTCGGTTCTCGTCCATGCGCCAGgtaaatctcc ... aattgcgcagGTCGTTTTGGATGTGAAACGAGCTCTTCTCGACAAGGGCCTGTCCACGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCGCACCTTTCAACGAGCCAGTCGAGGGATGGTGGAATATCAACCGCAGCAAAGCAGCGCAAGAGGGATGTAACTTTCGGTTCTCGTCCATGCGCCAGgtaaatctccgcttaattaaccagctgaaccaagacggagaaagaattgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG