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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCAAGGAAGGAATCAAGCGTCTCACCACTGAAACTGGTGCTGGACAGTGGGGAAGCGCTCTGGCTTTTGCTTGCTCAATCTTCAATCTCGACTGCGAGgtatagccacttgaagttcgtagtgagaaagaagctatatagttgcgttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ24275
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ24275 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GLYMA13G07130.1 (Glycine max), 5'ss of exon 3
TGCCAAGGAAGGAATCAAGCGTCTCACCACTGAAACTGGTGCTGGACAGTGGGGAAGCGCTCTGGCTTTTGCTTGCTCAATCTTCAATCTCGACTGCGAGgtatagccacttgaagttcgtagtgagaaagaagctatatagttgcgttgcag-----------------------------------------------
|    | | |||  |||||  | |    || |||||||||||||||||||||||||| ||  |||| ||||| |||   || ||   ||| | ||| ||||||| |||   ||  | | | | | |  |||||  ||  ||  ||| |   ||                                               
TTTACAAGCAGGTGTCAAGAATGTTGTGACAGAAACTGGTGCTGGACAGTGGGGAAGTGCATTGGCCTTTGCGTGCAGCATATTTGGTCTTGGCTGTGAGgtattgccctatggggattgaattcattaagaatttaactaactgcttgctagtcttggtacatttaactatttgttataatgcgttttgtttacaatta