1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ACGTATGCGAATCCTCTAAAGCACAATCCAGCGTATGTGGCGGTCAAGCAATACTTTGTGGACGAGGACGCCATGGTCGCCAAAGATgtgagttttctttggtttctcttggtcgatcattgccccgacttgcttctgtgtttatccag
species | Selaginella moellendorffii |
transcript | EFJ21599 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGCGGTCAAGCAATACTTTGTGGACGAGGACGCCATGGTCGCCAAAGAT ATTGTTGTCACGCTCAAAACACCAGGAGAAGGCATTCACTTCCGGCGTGCTEST: gi|70669058|gb|DN837635.1|DN837635
genomic: TGGCGGTCAAGCAATACTTTGTGGACGAGGACGCCATGGTCGCCAAAGATgtgagttttc ... gtttatccagATTGTTGTCACGCTCAAAACACCAGGAGAAGGCATTCACTTCCGGCGTGCT
EST: TGGCTGTCAAGCAATACTTTGTGGACGAGGACGCCATGGTCGCCAAAGAT ATTGTTGTCACGCTCAAAACACCAGGAGAAGGCATTCACTTCCGGCGTGCTEST: gi|169028988|gb|FE438128.1|FE438128
genomic: TGGCGGTCAAGCAATACTTTGTGGACGAGGACGCCATGGTCGCCAAAGATgtgagttttc ... gtttatccagATTGTTGTCACGCTCAAAACACCAGGAGAAGGCATTCACTTCCGGCGTGCT
EST: TGGCGGTCAAGCAATACTTTGTGGACGAGGACGCCATGGTCGCCAAAGAT ATTGTTGTCACGCTCAAAACACCAGGAGAAGGCATTCACTTCCGGCGTGCT
genomic: TGGCGGTCAAGCAATACTTTGTGGACGAGGACGCCATGGTCGCCAAAGATgtgagttttc ... gtttatccagATTGTTGTCACGCTCAAAACACCAGGAGAAGGCATTCACTTCCGGCGTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGTATGCGAATCCTCTAAAGCACAATCCAGCGTATGTGGCGGTCAAGCAATACTTTGTGGACGAGGACGCCATGGTCGCCAAAGATgtgagttttctttggtttctcttggtcgatcattgccccgacttgcttctgtgtttatccag
- - - - - - - - - - - - - - - - - - - - - - AAGCAA