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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACATGGACACGCCCCGGAACGCCTACAAGATCGATCAATCCGCGCCCGGATCCGACGTCGCGGCGGAGACAGCCGCAGCGCTCGCCGCCGCCTCGATCgtcttccagtacgcgaagccggagtactcgcgccaattgctcaacgcgtccaaacaggcaagaaccctaaaaagcagagcccctgctttcgcgctaagtttaaaattttaaaattcgggacccttttag

Basic information

species Selaginella moellendorffii
transcript EFJ21535
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ21535 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: LOC_Os01g21070.1 (Oryza sativa), 5'ss of exon 3
GGACATGGACACGCCCCGGAACGCCTACAAGATCGATCAATCCGCGCCCGGAT-CCGACGTCGCGGCGGAGACAGCCGCAGCGCTCGCCGCCGCCTCGATCgtcttccagtacgcgaagccggagtactcg-cgccaattgctcaacgcgtc-caaacaggcaagaaccctaaaaagcagagcccctgctttcgcgctaagtttaaaattttaaaattcgggacccttttag
       | | || ||  || ||||     | |||      || ||| ||  | |||      || |   | |  |  |||| | |  || ||||  |  |            ||    |  ||  ||||   ||   |  ||    | ||| | || |  |      |||      | |   |  || ||  || ||   ||| | ||  |    |||||||   | |   
------CGTCGCGGCCGAGACCGCCGCGGCGCTCGCCGCCGCCTCGCTCGTCTTCCGCAAGTCCGACCCGGCCTACGCCAGC-CGCCTCGTCGCCAGGGCCAAGAGGgtccgtgctcttctcgaccactcaatgctgctctcttgctgtgtcaccaatactctgttctccttctcccctgcttctttggtt--gctctgtttttgacatcctctgtttcgggattgtgtag-

upper sequence: EFJ21535 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: LOC_Os02g03120.1 (Oryza sativa), 5'ss of exon 1
GGACATGGACACGCCCCGGAACGCCTACAAGATCGATCAATCCGCGCCCGGATCCGACGTCGCGGCGGAGACAGCCGCAGCGCTCGCCGCCGCCTCGATCgtcttccagtacgcgaagccggagtactcgcgccaattgctcaacgcgtccaaacaggcaagaaccctaaaaagcagagcccctgctttcgcgctaagtttaa---aattttaaaattcgggacccttttag---------------------------
                                                         |||||| |  ||||| ||||| ||||||||||||||||| ||||||||||    | |  | ||    |||||   | |  ||||| ||||  |  ||| || | | ||    | |   ||    |      || |  | |  || |    |||||||| ||  | | |     ||                           
---------------------------------------------------------CGTCGCCGGCGAGACCGCCGCCGCGCTCGCCGCCGCCTCCATCGTCTTCCGCGTCTCCGACCCCTCCTACTCCGCCAAGCTGCTCGACGCAGCTCAACTGgtaggcaca--gacagctagctgtcacatactcacattcatcttgatttgattttaaatttgagaaactccccagagtcttccgctatggtggattagacga

upper sequence: EFJ21535 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: LOC_Os06g14540.1 (Oryza sativa), 5'ss of exon 2
---------GGACATGGACACGCCCCGGAACGCCTACAAGATCGATCAATCCGCGCCCGGATCCGAC-GTCGCGGCGGAGACAGCCGCAGCGCTCGCCGCCGCCTCGATCgtcttccagtacgcgaa-gccggagtactcgcgccaattgctcaacgcgtccaaacaggcaagaaccctaaaaagcagagcccctgctttcgcgctaagtttaaaattttaaaattcgggacccttttag---------------------------------------
          || |  | | |  |||    ||||  |   ||||       ||   |||   |||||     |  | |   |  |  | ||||   ||     | |   |    |||| ||    ||  ||   |||||  | ||   | ||      || | |       ||  |   ||  || | |     ||  | | || |   |||  |    |   | | |  | ||  |                                          
CGTCGCCGCCGAGACCGCCGCCGCCCTCGCCGCCGCCTCCATCGTCTTCCGCGACGCCGACCCCGACTACTCCAACCGCCTCCTCGACCGCGCCATCCAGgttcact-ccacactccattaattaaataccactgtactaactcctcctactagtactgttccatgtcattagggcataaatgagta-actaaatgtatgcacgttttctttctatcactggcacttgcaagccactctcacttgagcactcactctgcttcgtgtgtgtgatgggaag

upper sequence: EFJ21535 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G076049_T01 (Zea mays), 5'ss of exon 2
GGACATGGACACGCCCCGGAACGCCTACAAGATCGATCAATCCGCGCCCGGATCCGACGTCGCGGCGGAGACAGCCGCAGCGCTCGCCGCCGCCTCGATCgtcttccagtacgcgaagccggagtactcgcgccaattgctcaacgcgtccaaacaggcaagaaccctaaaaagcagagcc--cctgctttcgcgctaagtttaaaatt-ttaaaattcgggacccttttag-------------
                                                         |||||| || ||||| ||||| ||||||||||||| ||| ||||||||||   ||||  | || |  |||||    |   | ||| ||    ||      | |||| | |    |  | | | |  |   |  ||||     |   |  |    | |     | |  ||| ||               
---------------------------------------------------------CGTCGCCGCCGAGACCGCCGCCGCGCTCGCCGCCGGCTCCATCGTCTTCCGCGACGCCGACCCCGCCTACTCCAAGCGCCTCCTCGACCGCGCCGTCGCCgtaagagcgccgggagcccgggacgactctccgtcgcagctggcggatgacaactcacccgtgcgttcctgttgtgtgtgtggtgtag