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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGATTCCGACGTTTGCACCGAGCGGATTCTGGAAGACGACCACCTCTTGTGCCTCGACTGCACACACTATGGAAACGTTGCCAGGTTTATCAATCACAGgtactgtcgtctctcgtttctttccagcgctcgatctttcgtatcaacgttgtttcctccag

Basic information

species Selaginella moellendorffii
transcript EFJ20940
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ20940 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: Vv07s0005g04190.t01 (Vitis vinifera), 5'ss of exon 4
TCGATTCCGACGTTTGCACCGAGCGGA-TTCTGGAAGACGACCACCTCTTGTGCCTCGACTGCACACACTATGGAAACGTTGCCAGGTTTATCAATCACAGgtactgtcgt--------------ctctcgtttctttccagcgctcgatctttcgt-atcaacgtt-gtttcctccag----------------------
| ||| | ||  |  ||   ||| ||| |  || | || ||  |     | || || ||    |||   |||||||| ||||| |||||||||||||||||||| |    |              | || |  |   |  |     | || |||| | ||||  |||  |||  |  |                       
TAGATGCTGAT-TGGGCTTTGAGAGGAATCTTGAAGGATGAAGAAGCTCTCTGTCTAGATGCAACATTTTATGGAAATGTTGCAAGGTTTATCAATCACAGgtaattcttttagaaacacacaaacacttgcctaaatgaatgttgccatatttctttatcattgtttattttttttatttaactggtagtgcatatgtca